SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16202

Length: 1397 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16202

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rtf2 domain containing protein	-	-	2.0e-05	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	87%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	87%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKL9

Fln msg:

Fln protein: MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPLIDPLCCQKGHLFCKECILECLLAQKKDIKRKLASYEAHQKQEKEEEEEKLLLKRQQELDAFDQQNNGAVPQYNDKNHIRDKNSFHGANSVKVTSFEEEALRTMKAFWLPSATPEAQAKVDAPSLDTICPEGKEKLKLKSLFPVIFTKDPHDKKSEVLGASSICPSCKDTLTNRHTLMAISTCGHVYCKKCAEKFVKLDGVCFVCNKSCKEKHLISLEKGGTGFSGHGDHLEATDFKHVGSGSGMGLMRPTVKT*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACCAAAATACCAGGCTTCTTGACCTCTGAACCATTTGTGAATTCCAGGAAGTTCTTGTAACATCGCACTTTTTATCTCTTTTCAATAAGATCTGTCGCAGGCCATCCTAAATCCCCGAGTTAGCGAAG_-_ATGCCGCAGAGGCATTCAAAGAACAACAATGACTTGGCGTTCTTTACCTACGACGAGAAGAGAAAGCTTGGGTATGGTACCCAAAAGGAAAGGCTCGGCAAGGACTCCATTAAGCCCTTTGATGCCTGCTCTCTGTGCTTGAAGCCATTGATAGATCCCCTCTGCTGTCAGAAGGGCCACCTCTTCTGCAAAGAATGCATTCTAGAATGCCTGTTAGCGCAAAAGAAAGACATCAAGAGGAAACTTGCAAGCTATGAAGCACATCAAAAACAGGAGAAGGAGGAGGAAGAAGAGAAGCTGTTGTTAAAGAGGCAACAGGAACTTGATGCATTTGATCAGCAAAACAATGGTGCTGTACCTCAATATAATGACAAAAACCACATTCGAGACAAAAATAGTTTTCATGGGGCCAATAGTGTTAAAGTGACTTCATTTGAAGAGGAGGCTCTTCGGACAATGAAAGCATTTTGGCTGCCATCAGCAACTCCCGAGGCTCAAGCAAAAGTTGATGCACCTTCACTTGATACAATCTGCCCAGAGGGTAAAGAGAAACTGAAGTTGAAGTCTCTTTTTCCAGTTATTTTTACCAAAGATCCACATGATAAAAAGTCTGAGGTTTTGGGGGCCAGTTCTATTTGCCCTAGTTGCAAAGATACACTAACAAACAGGCATACACTAATGGCAATCAGCACTTGTGGCCATGTTTATTGCAAAAAGTGTGCAGAGAAATTTGTTAAATTAGATGGAGTTTGTTTTGTCTGCAATAAAAGCTGCAAAGAAAAGCATTTGATCTCCCTGGAAAAAGGAGGTACTGGATTTTCTGGTCACGGGGACCACTTGGAGGCAACCGATTTTAAACATGTTGGAAGTGGTTCTGGCATGGGACTTATGAGGCCAACAGTTAAAACATGA___ACATCAAATTCATGTTGAACTACTATGTACAAGTATAATTAAGCAGTCCTGGAATTTTAGTTGCTTGATTTCATAAATTTGAGCAAATAAAGCTTGATTTGCTTTTGTGTTCTAATTTTGAGTCTCTTATGCATCTGGAGTTTTAGGAGGACGGTGCATCTCTTTGCAGGCATTTGATCGAAAAATCATGCAGGCAGTTACTTTTTGCTCCGTATTATCGTAAGCTTTCTTTAAGAGGTTTTGGAGGATTTAATTCTGTTTTGTTCTGATATATATTAGTCAGCCTTGTTCAGCTGGCATGGTTCTAGGAATATGATAAGCATGGTATTAG

Fln Alignment:

sp_v1.1_unigene16202___MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPLIDPLCCQKGHLFCKECILECLLAQKKDIKRKLASYEAHXXXXXXXXXXXXXXXXXXXXDAFDQQNNGAVPQYNDKNHIRDKNSFHGANSVKVTSFEEEALRTMKAFWLPSATPEAQAKVDAPSLDTICPEGKEKLKLKSLFPVIFTKDPHDKKSEVLGASSICPSCKDTLTNRHTLMAISTCGHVYCKKCAEKFVKLDGVCFVCNKSCKEKHLISLEKGGTGFSGHGDHLEATDFKHVGSGSGMGLMRPTVKT
A9NKL9_______________MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACCLCLKPLIDPLCCQKGHLFCKECILECLLAQKKDIKRKLASYEAHQKQEKDEEEEKLMLKRQQELDAFDQQNNGAVPQYNDKSHIRDKNSFHGANSVKVTSFEEEALRTMKAFWLPSATPEAQAKVEAPSLDTICPEGKEKLKLKSLFPVNFTKDPHDKKSEILGTSSICPSCKDTLTNRHTLMAISTCGHIYCKKCAEKFVKLDGVCFVCNKSCKERHLIALEKGGTGFSGHGDRLEATDFKHVGSGSGMGLMRPTVKT

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
402	25		75		0.996473
611	34	65			1.0
644		81		18	1.0
677			15	84	1.0
746	54		45		1.0
761	42		57		1.0
953			12	87	0.992554
954			87	12	0.992554
955			87	12	0.992554
956	87	12			0.992554
957	87	12			0.992554
958	75	25			1.0
959	75			25	1.0
960	75	12		12	0.975346
961	12		87		0.992554
963	87	12			0.992554
964			87	12	0.992554
970		12	87		0.992554
1088		85		14	1.0
1144	78		21		1.0
1181	5	15		78	1.0
1288			88	11	0.923564
1316	66			33	0.997452
1318		33		66	0.997452
1319			33	66	0.997452
1320	66	33			0.997452
1322			33	66	0.997452
1324		66	33		0.997452
1325	33			66	0.997452
1328			33	66	0.997452
1329	33			66	0.997452
1330		33		66	0.997452
1333			33	66	0.997452
1334		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain