SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16199

Length: 1138 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16199

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L15-1 n=22 Tax=Embryophyta RepID=RL15A_PICMA	-	-	86%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	94%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	94%
Blast2go	ribosome	GO:0005840	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L15e	IPR000439	-	94%
Blast2go	Ribosomal protein L23/L15e core domain	IPR012678	-	94%
Blast2go	Ribosomal protein L15e, conserved site	IPR020925	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ28

Fln msg:

Fln protein: MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRVTRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKKNNTLSLRRYR*

Protein Length: 206

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCAATTGTTTCTACCTCCCATGATCCATCCTCTCAGAATTTCACACATAGACATTTAAAACGATAATTATTAAGTTTAAGCGTTTCACGGATACCCTAGCTATAAGATCATTCCACCCTGAAGCAAAGTGTCCGATACACAGCAAGGGGCCGCGGTTGTTTTGGCAGGAGGGTTTCGAT_-_ATGGGGGCGTATAAGTACATTGAGGAACTATGGAAGAAGAAGCAGTCGGATGTAATGAGGTTCTTGCAGCGAGTGAGATGCTGGGAATATCGTCAGCTTCCGGGTATAGTGAGGGTGACAAGGCCCAGCAGGCCTGACAAAGCTAGACGTCTCGGTTACAAGGCGAAGCAAGGTTATGTTATTTACCGGATAAGAGTGAGGCGTGGAGGTAGGAAGAGACCCGTTCCTAAGGGTATTGTTTATGGTAAGCCCAAGAATCAGGGTATTACCCAACTCAAGTTCCAGCGCAGCTTGAGGTCTGTGGCGGAGGAGCGAGCTGGTCGAAAGTTGGGGGGGCTAAGAGTTCTGAACTCCTACTGGATAAACCAGGATTCAACTTACAAGTATTATGAAATAATTCTTGTTGATCAAGCACACACTGTGATCAGGAATGATCCTAGAATAAATTGGATATGCAACGCAGTTCACAAGCACAGAGAACTTCGAGGGCTAACATCTGCTGGAAAGAAATACAGAGGTCTTCGAGGAAGGGGCCACCTTTATCACAAGGCTCGTCCTTCCAAACGTGCTACATGGAAGAAAAACAACACCCTGTCTCTTCGACGTTATCGTTAG___AAGTAATTGTCTGTGTATTATTTGCAAAAATTCTTGGAGCAGATCGCTTCAGTGTTTTGTTTTCGGAGTATTATTTCCAGTTTATAGTCTGGACAGGATTGCTGGCATAATTTTGTAGAACCTCGTAGTTATAGAAACTTCCGTTGGTGGATGAAATTAAACTAAATTCTAGTGGCTGCTTTATTTTGTGGAGGTTGATTCAATACATAATGATAGTTTTACAGTAAAACTCTTTTACCATAGTGTACATAATTTTGTTGTAACCTAATAATTTAATTTAAGGTCTATGAAGTATATAT

Fln Alignment:

sp_v1.1_unigene16199___MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRVTRPSRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXXVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKKNNT
A9NZ28_______________MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNT

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
233		90		10	0.90298
306		90		10	0.90298
561		45	54		1.0
562		54	9		1.0
570	10			90	0.90298
573		10	90		0.90298
575	90			10	0.90298
884		6		93	0.999364
967	76		23		1.0
1012			40	60	1.0
1068	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain