SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16192

Length: 1579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj\|BAD15406.1\| KH domain-containing protein-like [Oryza sativa Japonica Group] gb\|EAY84850.1\| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb\|EAZ22072.1\| hypothetica	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	67%
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	67%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	67%
Blast2go	K Homology domain	IPR004087	-	67%
Blast2go	K Homology domain, type 1	IPR004088	-	67%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN83

Fln msg:

Fln protein: MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVGGLDGKLGGRPGYREATSPGMAAAATFGASATAKISVDAALAGAIIGKGGVNSKQICRSTGAKLAIRDHESDTNLKNIELEGSFDQIKEASALVRQLIMHTSATLPAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDNSK*

Protein Length: 331

Fln nts: TCACTTTTTCCACCCGGACGCCCAATTATCCTCAAACCTAAAATCGATTTTCAAGTCCACCCTATTTAACAATCGTGACTTGCGATCCGTGAGTGATAGACACTTACTCTATCGCTGTCTCACCCCCGAAACCTAGGTCTACATTGCGAGAGTTACGCGACAGCTTGTTTCTACACTGTAACTGGCATTGATATTGGGCGGTCATCTGTAAGAATTTTTTTTGAGTTGTCTGTGTCTTTCTGGGTTTTGTTTAAGGGTTTTTCGCGCGGTTTGAGCTATTGGGTTGGAGATATCGAGCTTAGACAAGGGTTCTGAGAAGGTTTATTGTTTAGTTTGGTCGTATCATATAGGAGGGTTTAGCTCGAAGATCTC_-_ATGGACCCATTTGGGCACGCCCGCAAGAAGGCGAGGTCCGAGACATTTTTGAACGAAAATGGTGGTCTGTTCAATCCCCATGAGAGTAACATGTTCGGGGATGGCAACAGATTCAAGGCCGGTGGTATGAAATTCGCTTTACAGCCAGAAAAGGAGTCGTTACCAACAGGTTTAGGAAGCAAATCAAAGGCATGCACCAAGTTTTTCAGTCTTTCTGGATGCCCTTATGGAGAAGGCTGCCATTTCCAGCATTATGTTCCAGGTGGAGTGAATCCTGTTACTCAGATTGGAACTTTGGGGACTGCATTGGGTGCAGCTTCAAAGAAACCTACTGGGCTTTTGGCAGCAGAGCCAACATTAAATGCATCAAATTACAAGACACGCCTTTGTAGTAATTTTGGTACTGATACTGGATGTCGATTTGGGGACAAGTGCCATTTTGCCCATGGTGAAAAGGAGCTTGGGAAGGTAAATGCAGTGGCACACAATCTCAAAGATGATCTGGCAACAGGACCTTTTGGCAGTAGGTTCCCAGTTGGTGGCTTAGATGGAAAGCTTGGAGGTCGTCCTGGTTATCGTGAGGCTACTTCTCCTGGTATGGCAGCTGCAGCTACATTTGGTGCTTCAGCAACTGCAAAAATAAGTGTTGATGCTGCACTTGCTGGTGCAATAATTGGGAAAGGTGGTGTAAACTCTAAGCAAATTTGTCGTTCAACTGGTGCAAAATTGGCTATAAGAGATCATGAGTCCGATACTAATCTGAAGAATATTGAGTTGGAAGGTAGTTTTGATCAGATAAAGGAAGCTAGTGCCTTGGTTCGTCAGCTGATCATGCACACGAGTGCTACACTGCCTGCAAAGCAGCCTTCATTTACTACAAACAATTTCAAAACCAAGCTCTGTGAAAACTATGCACAAGGCACATGTACATTTGGGGATCGTTGCCACTTTGCGCATGGTGCCAGTGAGTTGCGAGACAACTCTAAATAA___TTCTGATTTTCTCTATACTCTTCATTTATGGGTATATTCTAGAAAGGTACTGTATCACAAGTTTTGAACCAGGGATTGTAGATGGTGAGGATTAGTAGTTGTTGCATGTTTATTTTACTGCTTTGGGCTTGCTTGAACTTGGGCATGGCCTATTGTAGGGTGAAATGCGCACATTATATTTCCCAATTTATTTGATGAAAACATTTCTGTGTAACTG

Fln Alignment:

sp_v1.1_unigene16192___MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVXXXXXXXXXXXXYREATSPGMXXXXXXXXXXXXKISVDXXXXXXXXXXXXVNSKQICRSTGAKLAIRDHESDTNLKNIELEGSFDQIKEASALVRQLIMHTSATLP-AKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN
B8LN83_______________MDPFGHARKKARSDAFLNENGGRFNPQESTMFGDGNRFKSGGLTFGSLPEKESLPTGLGSKSKACTKFFSTSGCPYGEGCHFQHHVQGGVNPVTQIPSLGSALGAASKKPVGVLPAEPTLNASNYKTRLCSNYNTGEGCRFGDKCHFAHGEKELAKVNAPAHNLKDDWATGPFGSRFPVGGLDGKPVGRPGYREATPPGMAAAATFGASATAKISVDAALAGPIIGKGGINSKHISRATGAKLAIRDHESDTNLKNIELEGSFDQIKEASAMVRQLIMHTSAVLPAAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
267		33		66	0.997452
419	16	83			0.994512
450	87	12			0.992554
497		12		87	0.992554
643		14		85	0.993533
783	80			20	0.995493
1015	16			83	0.999991
1016	27			18	1.0
1053	16		83		0.999991
1531	88		11		0.923564
1578		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain