SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16188

Length: 1963 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16188
GTCAAATCACTTTCAAAGTACTGTCTTTTATTCATTCATCATCACTTCTTCAGATCATTTCCTATATATTTCACAACCACGACACCGGTGTTTCCCCTTTTCTCGACTTATTATTCCATTTCTTGCTGTAGGAGATTGGGTTTGGCTTTTTGGGTTTGCATTCAACAGACAGAAGTTGGAGGCAGTTTTGGCGGCTTTTCAGAAGCTGGGTTTTCGTAGTTCAGCATCTCTTTTCTCGGCTTGGGCGGTCTATCAATTGGGTTGAAGAAAAAGCTGAAGAAGTTGCATTTTTGCAGCATTTGTTGATTTGGGTCTGTCTAGTTTAGGCCCTTTTAGGCCGCCTTTTGATCTAGATCTCTAAGCTTCATATCGGTTTTTAATCTGGGTGTGGCTTCTTTTGAAGACTGGATAAGGCATACATTGCATTCCTGGATCTGAAGTTGGTACTTGGAAGCTTTTGGACTTGGGTCTCTGGAATTTTGGTTGATTATATGCCTTGGACAGTGTTGGGCTTCTTCGAATTGAGGTCGTTTTGCCCTTAATTTGCTTTGAAGAAGGCGAGGAAACATCAAGGAAGCGAAATGGCCGCACCCAAGCCCGAGGACATCACTCATCCACCAATGGAACAACTGCCAGGCCTGGAATACTGCATAGACTCTAACCCCCCTTGGCCGGAGACAATTATTTTGGGTTTTCAACACTACATTTTGATGTTGGGAACTACAGTCATGGTTCCAACTTTTCTTGTTCCAGCAATGGGAGGAAATGACCATGACAAGGTGCGAGTAATACAGACATTGTTATTTGTTGCTGGGATCAATACGCTTCTGCAGTCATTATTTGGAAACACGTTTGCCAACAGTTGTTGGTGGTTCATTTGCATTTATTATACCAATAACATCTATTATAAATGATTCATCCCTCCGGAGTATTCCCGATGACCATGAGAGATTTGTTCATACCATGCGAGCTATCCAAGGAGCATTGATTGCTTCGTCAAGCTTGCAGATCATCCTTGGTTACAGCCAACTATGGGGTATTGTTTCTCGGTTTTTCAGTCCACTTGGTATGACGCCAGTTATAGCTTTGGTTGGATTTGGATTATTTGAGCGTGGTTTTCCTGGGGTTGGTAAATGCGTGGAAATTGGTTTGCCAATGCTCATTATATTTGTTGGATTTGCACAGTATTTGAAGCATATCCAGGCACGAGATCTACCTGTTTTTGAGCGCTTTCCGGTGCTTATTTGCATTACTCTTGTGTGGGCTTATGCTCATCTGCTTACTGCAAGTGGAGCTTACAAGCATGTGCCCGAGAGGACAAAAATCAACTGCCGCACTGATAGAGCTCACCTTATATCATCTGCTCCTTGGATAAAATTACCCTATCCTCTGCAATGGGGTGCCCCGACTTTTGATGCTGGCCATACGTTTGGAATGATGTCTGCAGTTCTTGTTTCTCTTATTGAGTCAACTGGAGCATATAAGGCAGCTTCACGACTTGCGAGTGCCACACCTCCTCCTGCATATGTTCTTAGCCGGGGTATTGGATGGCAGGGTATTGGCATACTATTAGATGGCCTTTTTGGGACAGGAACCGGCTCCACTGTTTCAGTAGAGAATGTTGGGCTTCTTGGTATTACTAGAGTAGGCAGCAGGCGTGTTGTGCAAATATCAGCTGGCTTTATGATCTTCTTTTCAATATTAGGGAAATTTGGAGCTCTTTTTGCATCAATACCATTTCCCATATTTGCTGCATTATACTGTGTGCTCTTCGCGCTGGTTGGTAAGTGATTTCAATCAATCTGAATGAAATATAACATATTTGGAATTTTAGGCATGTTGGTTTCCGAGTGTTTCTATTTACTGCCATTTTTCCCAGGGGCTGTTGGTGTTTCATTCATCCAATTCACTAACATGAACTCAATGAGAAACCTGTTCATCTTGGGAGTTTCCTTATTTCTGG

Ace file of the UniGene sp_v1.1_unigene16188

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleobase ascorbate transporter n=5 Tax=rosids RepID=B9H2G7_POPTR	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	nucleobase ascorbate transporter	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	transporter activity	GO:0005215	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Separated hits, possible frame ERROR between 845 and 847, Distance to subject end: 96 aas, your sequence is shorter than subject: 461 - 524

Fln protein: MAAPKPEDITHPPMEQLPGLEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFxxTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHERFVHTMRAIQGALIASSSLQIILGYSQLWGIVSRFFSPLGMTPVIALVGFGLFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYKHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISAGFMIFFSILGKFGALFASIPFPIFAALYCVLFALVGK*FQSI*MKYNIFGILGMLVSECFYLLPFFPGAVGVSFIQFTNMNSMRNLFILGVSLFL

Protein Length: 462

Fln nts: GTCAAATCACTTTCAAAGTACTGTCTTTTATTCATTCATCATCACTTCTTCAGATCATTTCCTATATATTTCACAACCACGACACCGGTGTTTCCCCTTTTCTCGACTTATTATTCCATTTCTTGCTGTAGGAGATTGGGTTTGGCTTTTTGGGTTTGCATTCAACAGACAGAAGTTGGAGGCAGTTTTGGCGGCTTTTCAGAAGCTGGGTTTTCGTAGTTCAGCATCTCTTTTCTCGGCTTGGGCGGTCTATCAATTGGGTTGAAGAAAAAGCTGAAGAAGTTGCATTTTTGCAGCATTTGTTGATTTGGGTCTGTCTAGTTTAGGCCCTTTTAGGCCGCCTTTTGATCTAGATCTCTAAGCTTCATATCGGTTTTTAATCTGGGTGTGGCTTCTTTTGAAGACTGGATAAGGCATACATTGCATTCCTGGATCTGAAGTTGGTACTTGGAAGCTTTTGGACTTGGGTCTCTGGAATTTTGGTTGATTATATGCCTTGGACAGTGTTGGGCTTCTTCGAATTGAGGTCGTTTTGCCCTTAATTTGCTTTGAAGAAGGCGAGGAAACATCAAGGAAGCGAA_-_ATGGCCGCACCCAAGCCCGAGGACATCACTCATCCACCAATGGAACAACTGCCAGGCCTGGAATACTGCATAGACTCTAACCCCCCTTGGCCGGAGACAATTATTTTGGGTTTTCAACACTACATTTTGATGTTGGGAACTACAGTCATGGTTCCAACTTTTCTTGTTCCAGCAATGGGAGGAAATGACCATGACAAGGTGCGAGTAATACAGACATTGTTATTTGTTGCTGGGATCAATACGCTTCTGCAGTCATTATTTGGxxxAACACGTTTGCCAACAGTTGTTGGTGGTTCATTTGCATTTATTATACCAATAACATCTATTATAAATGATTCATCCCTCCGGAGTATTCCCGATGACCATGAGAGATTTGTTCATACCATGCGAGCTATCCAAGGAGCATTGATTGCTTCGTCAAGCTTGCAGATCATCCTTGGTTACAGCCAACTATGGGGTATTGTTTCTCGGTTTTTCAGTCCACTTGGTATGACGCCAGTTATAGCTTTGGTTGGATTTGGATTATTTGAGCGTGGTTTTCCTGGGGTTGGTAAATGCGTGGAAATTGGTTTGCCAATGCTCATTATATTTGTTGGATTTGCACAGTATTTGAAGCATATCCAGGCACGAGATCTACCTGTTTTTGAGCGCTTTCCGGTGCTTATTTGCATTACTCTTGTGTGGGCTTATGCTCATCTGCTTACTGCAAGTGGAGCTTACAAGCATGTGCCCGAGAGGACAAAAATCAACTGCCGCACTGATAGAGCTCACCTTATATCATCTGCTCCTTGGATAAAATTACCCTATCCTCTGCAATGGGGTGCCCCGACTTTTGATGCTGGCCATACGTTTGGAATGATGTCTGCAGTTCTTGTTTCTCTTATTGAGTCAACTGGAGCATATAAGGCAGCTTCACGACTTGCGAGTGCCACACCTCCTCCTGCATATGTTCTTAGCCGGGGTATTGGATGGCAGGGTATTGGCATACTATTAGATGGCCTTTTTGGGACAGGAACCGGCTCCACTGTTTCAGTAGAGAATGTTGGGCTTCTTGGTATTACTAGAGTAGGCAGCAGGCGTGTTGTGCAAATATCAGCTGGCTTTATGATCTTCTTTTCAATATTAGGGAAATTTGGAGCTCTTTTTGCATCAATACCATTTCCCATATTTGCTGCATTATACTGTGTGCTCTTCGCGCTGGTTGGTAAGTGATTTCAATCAATCTGAATGAAATATAACATATTTGGAATTTTAGGCATGTTGGTTTCCGAGTGTTTCTATTTACTGCCATTTTTCCCAGGGGCTGTTGGTGTTTCATTCATCCAATTCACTAACATGAACTCAATGAGAAACCTGTTCATCTTGGGAGTTTCCTTATTTCTGG

Fln Alignment:

sp_v1.1_unigene16188___MAAPKPEDITHPPMEQLPGLEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFGxTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHERFVHTMRAIQGALIASSSLQIILGYSQLWGIVSRFFSPLGMTPVIALVGFGLFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYKHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISAGFMIFFSILGKFGALFASIPFPIFAALYCVLFALVGK*FQSI*MKYNIFGILGMLVSECFYLLPFFPGAVGVSFIQFTNMNSMRNLFILGVSLFL
B8LQ21_______________MAAPKLEDITHPPMEQLPGLEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFGxTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHQRFLHTMRAIQGALIASSSLQIILGYSQLWGIFSRFFSPLGMTPVIALVGLGLFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYKHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVA--------------------------------AVGISFIQFTNMNSMRNLFILGVSLFL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
662		75	8		0.99999
673		90		10	0.90298
676		10	90		0.90298
678		10	90		0.90298
679	88			11	0.923564
1033	42			57	1.0
1148			66	33	0.997452
1215			33	66	0.997452
1216	66			33	0.997452
1218		66	33		0.997452
1221	33			66	0.997452
1222		33		66	0.997452
1223		33		66	0.997452
1232	33			66	0.997452
1233		33		66	0.997452
1236	33	66			0.997452
1250	66			33	0.997452
1251	33			66	0.997452
1253	66			33	0.997452
1254		66		33	0.997452
1319	75		25		0.996473
1442		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain