SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16177

Length: 1262 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16177

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI-anchored protein n=1 Tax=Ipomoea nil RepID=A2PZD8_IPONI	-	-	1.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	gpi-anchored protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to membrane	GO:0031225	Cellular Component	0.0	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS9

Fln msg: your sequence is longer than subject: 219 - 179

Fln protein: MKAQTPTVTRGSTSNGSTEGSSSPLIDRNLGVNRSSFDTMHSSTRKCDFLALCYLILICLMFLSPPASAELLSGEVLHQPNVGARSLLQNLASCPVSFEFQNYTIITSQCKGPNYTRELCCTAFTEFACPFAQNINNLSTDCSQTMFSYINLYGKYPPGLFSNLCQGDTHGLLCEAEVPSPSSSENANAAGSCRVLKSFSVFIWLVLINLFPIWYLQS*

Protein Length: 220

Fln nts: TCTGACAACTTGCAGCCCGCGCCTATTCCACTCATCCTCCGAAGCATAACTTTGTCGTCGGACGACACCTAAGATACGCGTTTCTTGTACATCGAAGATCGCT_-_ATGAAAGCACAGACCCCGACTGTCACTCGGGGCTCTACCTCGAACGGATCTACCGAGGGCTCCTCATCTCCGTTGATTGACAGAAATCTGGGGGTGAACAGATCCAGCTTCGACACAATGCATTCCTCTACGAGAAAATGTGATTTCTTGGCACTTTGTTATTTGATACTGATCTGTCTCATGTTCCTTTCACCTCCAGCTTCAGCTGAACTCCTATCAGGGGAGGTTTTGCATCAGCCTAATGTGGGGGCTAGAAGCTTGCTTCAAAATTTAGCGAGTTGCCCTGTAAGTTTTGAGTTCCAGAATTACACTATAATAACAAGCCAGTGCAAAGGTCCAAATTACACACGGGAGCTTTGTTGTACTGCGTTCACGGAATTTGCATGTCCCTTTGCTCAAAATATAAATAATCTGTCGACTGATTGCTCACAAACAATGTTCAGCTACATAAATTTATATGGAAAGTATCCACCAGGTCTCTTTAGTAATCTCTGTCAAGGAGATACACATGGTTTATTGTGCGAAGCAGAAGTTCCATCACCAAGCTCTTCTGAGAATGCGAATGCTGCAGGGTCATGTCGGGTCTTGAAAAGTTTCTCAGTGTTTATCTGGCTTGTATTAATCAACTTATTCCCAATTTGGTACTTACAATCGTGA___AATTGTTGACAAATATTTGTGTTTCACTTTTTAGTAGTTTTGTTCCTAGTAGAAACTCATGGTATTATTTCTATTCACTTGTCATAGATTTGCATCTAATTTGCCTTTCCTTCAGGAAGGCAATAATCAACCCCTCGTTCAGATGTCAACAGCGTTTCAATTTCTGGTATTTATGTCTATTGAAAAATGAAATGACTGTAGGGTGTTTGTCTCATTTTCGGTGCATTTGTGAAGCTAATTTGATCAAACGTTTAGGGTTAGGCTATAGCATTTGCTGAAGTGGTGAATCCCTCCTCGGCTGATTTCAGAGTCATTGATTTGAACATGATATACCCCGATATGTATTGCAGAGTTATGTGGAAAACAAAGGCCGTGATTTCCGTTTGCAAATGAAGATTTGCCTAATTATTTATGCTTGCTGCTTGCTTGATGGATATGGTCTCAAATTTTCTTTGGAAGTGAGGGAATTCCCTGATACTACCTTTGTTGGACATTAGCATTG

Fln Alignment:

sp_v1.1_unigene16177___MHSSTRKCDFLALCYLILICLMFLSPPASAELLSGEVLHQPNVGARSLLQNLASCPVSFEFQNYTIITSQCKGPNYTRELCCTAFTEFACPFAQNINNLSTDCSQTMFSYINLYGKYPPGLFSNLCQGDTHGLLCXXXXXXXXXXXXXXXXGSCRVLKSFSVFIWLVLINL
A9NKS9_______________MQSTPEKYVLMTFCSLTLIYLAFFSPPASAEFLSEVALHQPNVGGRSLLQNLKSCPISFEFQNYTIITSQCKGPNYTREHCCSAFVEFACPFAQYINDQTTDCATTMFSYINVYGKYPPGLFSSFCQGDKNGLPCEAEVPSPSSSENVNASRAHRVLQSFSVFIWIVLVNL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
319	78		21		1.0
441		95	4		0.995881
443	95	4			0.995881
444	95		4		0.995881
446			4	95	0.995881
455		4	95		0.996599
667	12			87	1.0
678		94	5		0.998578
869		96	3		0.991164
875			96	3	0.99245
876		3	96		0.99245
1100	94			5	0.998894
1101		5		94	0.998894
1103		5		94	0.998894
1105			5	94	0.998894
1111	93			6	0.999264
1113	7			92	0.999532
1114		7		92	0.999532
1116			7	92	0.999602
1118		7		92	0.999602
1119		8	91		0.999766
1148	90	10			0.90298
1150	90		10		0.90298
1154	90			10	0.90298
1158		10		90	0.90298
1159	10			90	0.90298
1160			10	90	0.90298
1170	20			80	0.995493
1171	25			75	0.996473
1174	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain