SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16176

Length: 1291 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16176

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	28 kDa heat-and acid-stable phosphoprotein, putative n=1 Tax=Ricinus communis RepID=B9S940_RICCO	-	-	3.0e-35	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	5.37118e-42	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	5.37118e-42	82%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	5.37118e-42	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	5.37118e-42	82%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	5.37118e-42	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Casein kinase substrate, phosphoprotein PP28	IPR019380	-	5.37118e-42	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKF1

Fln msg:

Fln protein: MGRGKFKGKPTGRRHFSTVEEIRAGTSAKPRGFRQEEEPSEEEEVEESSEEESEESANEKKKGTQGLIEIENPNIAKPKNIKARDVDVEKTTELSRREREELEKQKAHERYMRLQEQGKTEQARKDLERLTLIRQQRADAAKKREEEKAAREQKKVEARK*

Protein Length: 162

Fln nts: ATGGGGGATTGCACCACGCTGAAAATCCGAATCAAACCCTCCCTCCGAGTAACCCTAGGGCACGACGGGGTTGGCTCAACCACAAAAGCGTCGTGACCTTGGCTGTCACTCATGAGTGATTGAGTTTTGTGTTTTGTATGATTCTTAGTAGAAGAGGTTGAGGAGAGCTTGAAGACCTGTGGGTGAGCAACTAACAGGAGCGGGCTAAGATTCGAGGGAAGAAGAGCCGCGGTTTTGGTTTATACCCACTTTACAAATTGTCAACCATCTGCGCTTCCGGGCTCTGCGTTTGGGTTTTTCCGGAAGCCAAGAGACCCCTTTCTATCCAAGTGCGTACGGGAGAAACATCCCTTAAAGCATTACTGGGGCTCTGAAACTGAAGATTGAGTTCATTTTCTGATCCAGGCGTGGCAGATCGGAGGAGGACCGGCGGCTCTTTTGGTTTATTTGCTCAAGGAAG_-_ATGGGAAGAGGCAAATTCAAGGGCAAGCCCACAGGGCGCAGACACTTCTCAACAGTTGAAGAAATACGTGCAGGGACTTCTGCCAAACCTCGTGGCTTCAGGCAGGAAGAAGAGCCGAGTGAAGAGGAGGAGGTAGAAGAATCATCAGAAGAAGAATCTGAAGAATCAGCAAATGAAAAAAAAAAGGGAACTCAGGGTCTGATTGAGATTGAGAATCCTAATATTGCTAAGCCAAAGAACATCAAGGCTCGAGATGTGGATGTTGAGAAAACAACAGAGCTGTCAAGACGGGAGAGGGAAGAGTTAGAAAAACAAAAGGCTCATGAACGATATATGAGGTTACAGGAACAAGGCAAAACAGAACAGGCCAGGAAAGATTTGGAACGCCTAACTCTAATCAGACAGCAACGGGCAGATGCTGCAAAGAAGCGTGAGGAAGAGAAGGCTGCGAGAGAACAGAAAAAAGTCGAGGCACGGAAATGA___GATTTCTTGCTTTGGATTTTATTAACTTTGCCTTTGACTGATACCAGCTGTACTTTCAGGCTGGTTAAATACTTATTAGCTCATACATAGTCATTTCAATTTTTAGTCGTGTTACTTTTATTTACTTTAGCTTTGACTGATAACAGCTGTGTGCTGGTGATCTAGCAGTACTTACGTTATACTGTATACATAATCATATAAAAAAGTAGTTGTATTTTATTTTTATTTACTTTACCTTGTCTGATAGTGGCTGTACTTTTGAATATAGCTGGTTAATACTTATTAGGTCATACATAGTGTTTTCAAATTTTAGTCTTTAATAACTCAATATCAATATCATATTATGGC

Fln Alignment:

sp_v1.1_unigene16176___MGRGKFKGKPTGRRHFSTVEEIRAGTSAKPRGFRQ-XXXXXXXXXXXXXXXXXXXXXANEKKKGTQGLIEIENPNIAKPKNIKARDVDVXXXXXXXXXXXXXXXXQKAHERYMRLQEQGKTEQARKDLERLTLIRQQ
A9NKF1_______________MGRGKFKGKPTGRRHFSTVEEIRAGTSAKPRGFRQEEEQIEEEEEVEESSEEESEESATEKKKGTQGLIEIENPNITKPKNIKARDVDIEKTTELSRREREELEKQKAHERYMRLQEQGKTEQARKDLERLTLIRQQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
112	20	80			0.995493
114			20	40	1.0
118			16	83	0.994512
426		50	50		1.0
452		59		40	1.0
616	88		11		0.923564
621	14		85		0.993533
709	14	85			0.993533
711		85	14		0.993533
926	93		6		0.999998
1083	4		95		0.99692
1149	76		4		1.0
1168		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain