SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16174

Length: 993 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16174

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin n=1 Tax=Volvox carteri f. nagariensis RepID=D8U995_VOLCA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	polyubiquitin 2	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	97%
Blast2go	response to UV-B	GO:0010224	Biological Process	97%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	97%
Blast2go	protein neddylation	GO:0045116	Biological Process	97%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	97%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	97%
Blast2go	protein binding	GO:0005515	Molecular Function	97%
Blast2go	nucleolus	GO:0005730	Cellular Component	97%
Blast2go	vacuole	GO:0005773	Cellular Component	97%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	97%
Blast2go	Ubiquitin conserved site	IPR019954	-	97%
Blast2go	Ubiquitin supergroup	IPR019955	-	97%
Blast2go	Ubiquitin subgroup	IPR019956	-	97%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
75	33	33	33		0.997753
77		66	33		0.997452
191		4		95	0.994598
196	4		95		0.994598
303	95			4	0.996599
394		6	93		0.999264
700		85		14	0.993533
708			85	14	0.993533
710			14	85	0.993533
711	85		14		0.993533
712	85	14			0.993533
714		85	14		0.993533
716	85	14			0.993533
717	14		85		0.993533
720	85			14	0.993533
721			14	85	0.993533
722			14	85	0.993533
723		85	14		0.993533
725	14			85	0.993533
726		85	14		0.993533
729			14	85	0.993533
730	14	85			0.993533
731			14	85	0.993533
737	14	85			0.993533
738	14	85			0.993533
823		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
228	240	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain