SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16166

Length: 3652 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16166
GGGTAAATCGCAGCCGTCCGTGGCCGCCGAGTGGAGAAGAAAGGATAACCGTGGCCCTAAAATGGGGATATCCATACGATTCATACAGTTATCAGGGTTTCCTTCTTTTGAGATTCGTTTCAATCGATTACTTCGCCCTGCTTTGGAGCTTCTTCGCATCTATTTCTGAAGAATTATCTACGGAGACCTGAGATTCGAAAAATCGCTGCGGTAGTTCGAGTTTGTAAAACCTCTCTGTCATTTTCTGCGGGGCGTTTGATCAAGATCGGAGTTTTCTGGGGTTTCTTTCGTTCAGTTTGAAGTTTTCAGCGGACATTTGGAGCAAGTTTCATCCATGGCTTCCCGTTTCTGGACCCAGGGTGATAGCGAATCTGAAGAGGAAGAGAGTGAAATTGAAGAGGAGGAGAATGTTGGCGGAGGTGAAACTGGTGCCGTGGCTGTTGGATCGAATAAATATCTTCAAAAGAATGCAAGCGACAGTGAGGATTCTGATGATCAGCGTAGGGTTGTCAGATCTGCAAAGGACAAGAGGTTTGAAGAGATGTCCCTTACAGTCGATCAAATGAAGAATGCCATGAAGATTAATGACTGGGTCAGCTTACAGGAGAGTTTCGATAAACTTAACAAGCAGCTTGAGAAAGTCATTCGTGTCATGGAATCGGACCAGGTTCCACGCCTGTATATCAAGGCTCTTGTGATGCTGGAGGACTTTTTGGCACAAGCAATGGCAAACAAAGAGGCTAAGAAGAAGATGAGCTCCAGTAATGCAAAAGCCCTGAATTCAATGAAGCAAAAACTGAAGAAGAATAATAAACAATATGAAGCCGAGATTGAGAAGTATAGAGCCAGCCCTGTATCAGAGGATGATGCTGTTAAATCCGACGACGATGAAGACGACGATTTGGAATCCGAATTGGATGTTGAAGAAGATCCTGCTAATTTGGCTACGGAATCTGATGATGATGAAGATGAAGAGGGTAACCAGGAAGATGAAGAGGGCGGTTGGGAGAAAAAGAAAAGTAAGAGGGATAAGTTAATGGACAAGCAGTTTATGCGAGACCCAAGTGAGATTACTTGGGAAATGGTGGACAAGAAGCTTAAAGAGATAATTGCTGCTCGTGGACGGAAAGGGACAGGAAGGCTTGAGCGTGTCGAATTACTAACATACCTGACAAAGGTTGCAAAGACCCCGGCGCAGAAGTTAGAGGTTTTGGTCAACGTTGTATCTGCACAGTTTGATGTAAACCCTAGCCTCAGCACACACATGCCGATTCCTGTCTGGAAGAAATGCGTTCATAATATTCTTGTCATGCTGGATATCTTGGCTCAATACCCTAACATAGTTATGGATGATTCAGTGGAGCACGATGAGAAGGAGACTCAGAAAGGAACGGATTATCAGGGAACAATTCGAGTGTGGGGTAATATTGTTGCATTCCTTGAACGCATTGACAATGAACTCTTCAAAAGTTTGCAATGTATTGATCCCCACACTAAGGAGTATATTGAGAGGCTCCGAGATGAGCCTTTATTTATGGTCCTTGCTCAGAATGTTCAGGATTATGTTGAGCGGGTCCAAGATCTGAAGGCAGCCGCAAAGGTGGCCCTAAAACGTGTAGAACTCATATACTATAAGCCCCAAGAGGTATATGAAGCCATGAGGAAATTGGCTGAGACCCAAACCAGGACTGAAGTTGCAGCTGATATTGATTTGGCTGCAGCAGAAAATGGAGACATGGATGTGGATGAGGACGGCAAAGTTATTGTAGAACCTAAGATAACTGAAGAAATCAGAGGACCACCGGCATTCATTGTTACTACAGAAATTGTGCCAAGGAGGCCAACATTTCCAGAGCATAGCAGGAGCCTTATGGATTCTCTAGTGTCTCTCATTTATAAGCATGGTGATGAGCGAACAAAAGCGAGGGCCATGCTTTGTGATATTTATCACCATGCAATATTGGATCAGTTTTCTATGGCTAGGGATTTATTGCTCATGAGCCACTTGCAGGATGGGGTACAACACATGGATATTTCCACCCAGATACTTTTCAATCGAGCAATGGCTCAACTTGGTCTCTGTGCTTTCCGAGCATCTCTAATTTCAGAAGCACACGGCTGCCTTTCTGACCTCTATGCAGGGGGCAGGGTTAAGGAATTGCTGGCCCAAGGTGTACAACAGAGTCGATATCATGAAAAAACTCCAGAGCAGGAAAAACTTGAGAGGAGGCGTCAAATGCCTTACCACATGCATATTAATTTGGAACTGCTTGAAGCAGTACATCTGATTTGTGCCATGCTCTTGGAAGTACCAAATATGGCTGCTAATACACATGATGTCAGAAGGAAGGTGATTAGTAGGACTTTCCGCCGTTTATTGGAGATTAATGAGAGGCAAACATTTACTGGTCCCCCGGAGAATGTTCGTGATCATGTTATGGCTGCAACACGTGCATTAAGCAAAGGTGATTGGAAGAAAGCATATGGAGTCATTGCAAGTCTTGACATCTGGAAGCTTCTACGAGAGAAAGAGAAGGTACTAGAAATGTTGAAGTTCAAAATTCATGAAGAAGCTCTGAGAACTTACATATTTACCTATTCTTCATGCTATAGTTCTATGAGCTTAGATCAGCTGGAAACTATATTTGAGCTTTCTGAAGCACAAGTGCACAGCATAGTTAGCAAGATGATGGTTGCAGAAGAATTTCATGCCAGCTGGAATCAGCCTACACGTTGCATTGTTACTCATGATGTAGAGCCTACCAGATTACAAGCCCTGGCATCACAGTTTGCTGAGAAATTGTCAGGTCTTGTTGATATCAATGAGAGAGCTTTTGATGCTCGAACTGGCGGCGGCCAAGAGGGGCCTTCTGCAAATAGGCGAAGAGAGAACCAAGATTATGCTGGTGCTGCTTCTGGTCGATGGCAAGCTGATTTTTCAGCTGGTCAAGGCAGACAGGGTAATTATTCTAACCGTTCAAATTATACAGGTGGAAGAAATGCAAATAATCAGGCACGTAGTGGTGGTACTGGAGGTACATTTGGCAAAGATCGTTATGGTCAGGCTGGTCGTGGGGGGTCTGGATATTCTTCGGGATATCAGAGCACACGTTACCAAGATGCTTATAGTAGTGTTGGGAGAACTTATCAGACTGGACAAGCAGCATCTACTTCCCTTAGAGGATCTCAGCCTGATGGATCTGGCCGTATGGTGAGCCTGACAAGATCTGGCAGGTTTTAGTATTTTTGATGCGGTATTTGATATTTCTAAAGAGTTTTTGTTGCTTCAGTAGCCACTTTTGTTTTGAAATTGTGTTGGTTCCTAGACCAGGCAGCGTTAAGGGAACTCCTCGTTACATGGTCCATTGAACATTTGACGTTTGTTGAGGTATTAATGAAAGCCGAACTTGTTTGGTTGATGCCGGATAGCATAAGCATACATATTTTGGAATGTAGTCATTGAGTTATTCCGAATATATTTTCTGGTTGCTGATCTAAAATTTTGGGCATTTGTGACTTTAAGATTGCTGACTTGGTTTTGGAATGCCTTAAATTTGAGTAAAGGTAATCTCTGTTTATAATAGTAAGGATAGTGAATTCTCTCACACTTGCGATTGTTTCGAATAGGGCAATTGTTTCATTCATTAATGGA

Ace file of the UniGene sp_v1.1_unigene16166

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	77%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	77%
Blast2go	Eukaryotic translation initiation factor 3 subunit 8, N-terminal	IPR008905	-	77%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7W0

Fln msg: your sequence is longer than subject: 969 - 334

Fln protein: MASRFWTQGDSESEEEESEIEEEENVGGGETGAVAVGSNKYLQKNASDSEDSDDQRRVVRSAKDKRFEEMSLTVDQMKNAMKINDWVSLQESFDKLNKQLEKVIRVMESDQVPRLYIKALVMLEDFLAQAMANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEAEIEKYRASPVSEDDAVKSDDDEDDDLESELDVEEDPANLATESDDDEDEEGNQEDEEGGWEKKKSKRDKLMDKQFMRDPSEITWEMVDKKLKEIIAARGRKGTGRLERVELLTYLTKVAKTPAQKLEVLVNVVSAQFDVNPSLSTHMPIPVWKKCVHNILVMLDILAQYPNIVMDDSVEHDEKETQKGTDYQGTIRVWGNIVAFLERIDNELFKSLQCIDPHTKEYIERLRDEPLFMVLAQNVQDYVERVQDLKAAAKVALKRVELIYYKPQEVYEAMRKLAETQTRTEVAADIDLAAAENGDMDVDEDGKVIVEPKITEEIRGPPAFIVTTEIVPRRPTFPEHSRSLMDSLVSLIYKHGDERTKARAMLCDIYHHAILDQFSMARDLLLMSHLQDGVQHMDISTQILFNRAMAQLGLCAFRASLISEAHGCLSDLYAGGRVKELLAQGVQQSRYHEKTPEQEKLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGPPENVRDHVMAATRALSKGDWKKAYGVIASLDIWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEAQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSANRRRENQDYAGAASGRWQADFSAGQGRQGNYSNRSNYTGGRNANNQARSGGTGGTFGKDRYGQAGRGGSGYSSGYQSTRYQDAYSSVGRTYQTGQAASTSLRGSQPDGSGRMVSLTRSGRF*

Protein Length: 970

Fln nts: GGGTAAATCGCAGCCGTCCGTGGCCGCCGAGTGGAGAAGAAAGGATAACCGTGGCCCTAAAATGGGGATATCCATACGATTCATACAGTTATCAGGGTTTCCTTCTTTTGAGATTCGTTTCAATCGATTACTTCGCCCTGCTTTGGAGCTTCTTCGCATCTATTTCTGAAGAATTATCTACGGAGACCTGAGATTCGAAAAATCGCTGCGGTAGTTCGAGTTTGTAAAACCTCTCTGTCATTTTCTGCGGGGCGTTTGATCAAGATCGGAGTTTTCTGGGGTTTCTTTCGTTCAGTTTGAAGTTTTCAGCGGACATTTGGAGCAAGTTTCATCC_-_ATGGCTTCCCGTTTCTGGACCCAGGGTGATAGCGAATCTGAAGAGGAAGAGAGTGAAATTGAAGAGGAGGAGAATGTTGGCGGAGGTGAAACTGGTGCCGTGGCTGTTGGATCGAATAAATATCTTCAAAAGAATGCAAGCGACAGTGAGGATTCTGATGATCAGCGTAGGGTTGTCAGATCTGCAAAGGACAAGAGGTTTGAAGAGATGTCCCTTACAGTCGATCAAATGAAGAATGCCATGAAGATTAATGACTGGGTCAGCTTACAGGAGAGTTTCGATAAACTTAACAAGCAGCTTGAGAAAGTCATTCGTGTCATGGAATCGGACCAGGTTCCACGCCTGTATATCAAGGCTCTTGTGATGCTGGAGGACTTTTTGGCACAAGCAATGGCAAACAAAGAGGCTAAGAAGAAGATGAGCTCCAGTAATGCAAAAGCCCTGAATTCAATGAAGCAAAAACTGAAGAAGAATAATAAACAATATGAAGCCGAGATTGAGAAGTATAGAGCCAGCCCTGTATCAGAGGATGATGCTGTTAAATCCGACGACGATGAAGACGACGATTTGGAATCCGAATTGGATGTTGAAGAAGATCCTGCTAATTTGGCTACGGAATCTGATGATGATGAAGATGAAGAGGGTAACCAGGAAGATGAAGAGGGCGGTTGGGAGAAAAAGAAAAGTAAGAGGGATAAGTTAATGGACAAGCAGTTTATGCGAGACCCAAGTGAGATTACTTGGGAAATGGTGGACAAGAAGCTTAAAGAGATAATTGCTGCTCGTGGACGGAAAGGGACAGGAAGGCTTGAGCGTGTCGAATTACTAACATACCTGACAAAGGTTGCAAAGACCCCGGCGCAGAAGTTAGAGGTTTTGGTCAACGTTGTATCTGCACAGTTTGATGTAAACCCTAGCCTCAGCACACACATGCCGATTCCTGTCTGGAAGAAATGCGTTCATAATATTCTTGTCATGCTGGATATCTTGGCTCAATACCCTAACATAGTTATGGATGATTCAGTGGAGCACGATGAGAAGGAGACTCAGAAAGGAACGGATTATCAGGGAACAATTCGAGTGTGGGGTAATATTGTTGCATTCCTTGAACGCATTGACAATGAACTCTTCAAAAGTTTGCAATGTATTGATCCCCACACTAAGGAGTATATTGAGAGGCTCCGAGATGAGCCTTTATTTATGGTCCTTGCTCAGAATGTTCAGGATTATGTTGAGCGGGTCCAAGATCTGAAGGCAGCCGCAAAGGTGGCCCTAAAACGTGTAGAACTCATATACTATAAGCCCCAAGAGGTATATGAAGCCATGAGGAAATTGGCTGAGACCCAAACCAGGACTGAAGTTGCAGCTGATATTGATTTGGCTGCAGCAGAAAATGGAGACATGGATGTGGATGAGGACGGCAAAGTTATTGTAGAACCTAAGATAACTGAAGAAATCAGAGGACCACCGGCATTCATTGTTACTACAGAAATTGTGCCAAGGAGGCCAACATTTCCAGAGCATAGCAGGAGCCTTATGGATTCTCTAGTGTCTCTCATTTATAAGCATGGTGATGAGCGAACAAAAGCGAGGGCCATGCTTTGTGATATTTATCACCATGCAATATTGGATCAGTTTTCTATGGCTAGGGATTTATTGCTCATGAGCCACTTGCAGGATGGGGTACAACACATGGATATTTCCACCCAGATACTTTTCAATCGAGCAATGGCTCAACTTGGTCTCTGTGCTTTCCGAGCATCTCTAATTTCAGAAGCACACGGCTGCCTTTCTGACCTCTATGCAGGGGGCAGGGTTAAGGAATTGCTGGCCCAAGGTGTACAACAGAGTCGATATCATGAAAAAACTCCAGAGCAGGAAAAACTTGAGAGGAGGCGTCAAATGCCTTACCACATGCATATTAATTTGGAACTGCTTGAAGCAGTACATCTGATTTGTGCCATGCTCTTGGAAGTACCAAATATGGCTGCTAATACACATGATGTCAGAAGGAAGGTGATTAGTAGGACTTTCCGCCGTTTATTGGAGATTAATGAGAGGCAAACATTTACTGGTCCCCCGGAGAATGTTCGTGATCATGTTATGGCTGCAACACGTGCATTAAGCAAAGGTGATTGGAAGAAAGCATATGGAGTCATTGCAAGTCTTGACATCTGGAAGCTTCTACGAGAGAAAGAGAAGGTACTAGAAATGTTGAAGTTCAAAATTCATGAAGAAGCTCTGAGAACTTACATATTTACCTATTCTTCATGCTATAGTTCTATGAGCTTAGATCAGCTGGAAACTATATTTGAGCTTTCTGAAGCACAAGTGCACAGCATAGTTAGCAAGATGATGGTTGCAGAAGAATTTCATGCCAGCTGGAATCAGCCTACACGTTGCATTGTTACTCATGATGTAGAGCCTACCAGATTACAAGCCCTGGCATCACAGTTTGCTGAGAAATTGTCAGGTCTTGTTGATATCAATGAGAGAGCTTTTGATGCTCGAACTGGCGGCGGCCAAGAGGGGCCTTCTGCAAATAGGCGAAGAGAGAACCAAGATTATGCTGGTGCTGCTTCTGGTCGATGGCAAGCTGATTTTTCAGCTGGTCAAGGCAGACAGGGTAATTATTCTAACCGTTCAAATTATACAGGTGGAAGAAATGCAAATAATCAGGCACGTAGTGGTGGTACTGGAGGTACATTTGGCAAAGATCGTTATGGTCAGGCTGGTCGTGGGGGGTCTGGATATTCTTCGGGATATCAGAGCACACGTTACCAAGATGCTTATAGTAGTGTTGGGAGAACTTATCAGACTGGACAAGCAGCATCTACTTCCCTTAGAGGATCTCAGCCTGATGGATCTGGCCGTATGGTGAGCCTGACAAGATCTGGCAGGTTTTAG___TATTTTTGATGCGGTATTTGATATTTCTAAAGAGTTTTTGTTGCTTCAGTAGCCACTTTTGTTTTGAAATTGTGTTGGTTCCTAGACCAGGCAGCGTTAAGGGAACTCCTCGTTACATGGTCCATTGAACATTTGACGTTTGTTGAGGTATTAATGAAAGCCGAACTTGTTTGGTTGATGCCGGATAGCATAAGCATACATATTTTGGAATGTAGTCATTGAGTTATTCCGAATATATTTTCTGGTTGCTGATCTAAAATTTTGGGCATTTGTGACTTTAAGATTGCTGACTTGGTTTTGGAATGCCTTAAATTTGAGTAAAGGTAATCTCTGTTTATAATAGTAAGGATAGTGAATTCTCTCACACTTGCGATTGTTTCGAATAGGGCAATTGTTTCATTCATTAATGGA

Fln Alignment:

sp_v1.1_unigene16166___MPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGPPENVRDHVMAATRALSKGDWKKAYGVIASLDIWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEAQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSANRRRENQDYAGAASGRWQADFSAGQGRQGNYSNRSNYTGGRNANNQARSGGTGGTFGKDXXXXXXXXXXXXXXXXXXXXXXDAYSSVGRTYQTGQAASTSLRGSQPDGSGRMVSLTRSGRF
D5A7W0_______________MPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGPPENVRDHVMAATRALSKGDWKKAYEVIVSLDTWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEVQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSGNRRRENQDYAGAASGRWQADFSAGQGRQGNYSNRSNFTGGRNANNQARGGGTGATFGKDRFGQGGRGGSGYSSGYQSTRYQDAYGSVGRTYQTGQAASAAVRGTQQDGSGRMVSLTRTGRF

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
266			66	33	0.997452
267	66		33		0.997452
268			33	66	0.997452
269		66	33		0.997452
291	33	66			0.997452
328	11		88		0.923564
330			11	88	0.923564
331			11	88	0.923564
332		88	11		0.923564
583	90			9	0.999842
585			13	86	1.0
586	86		13		1.0
587	86	9	4		0.999642
1007	16		83		0.994512
1008	16		83		0.994512
1010	80		20		0.995493
1455		90		10	0.90298
1456	90		10		0.90298
1457	90		10		0.90298
1786	12		87		0.992554
1804		90		10	0.90298
1904	88			11	0.923564
1905	11			88	0.923564
2005		87	12		0.999964
2006	87			12	0.999964
2008			12	87	0.999964
2013		12	87		0.999964
2014		12	87		0.999964
2015	87			12	0.999964
2019		12	87		0.999964
2027	87			12	0.999964
2965	71		28		1.0
2966	71		28		1.0
2967			28	71	1.0
2978			87	12	0.992554
3022	88	11			0.923564
3026	11		88		0.923564
3027		11		88	0.923564
3028		11	88		0.923564
3029			88	11	0.923564
3031	88		11		0.923564
3034		18	81		0.999994
3036	72	9		18	0.999994
3037	9	18	72		0.999994
3049	81			18	0.999994
3050	81		18		0.999994
3051	81			18	0.999994
3052	9	18	72		0.999994
3081	9		72		0.999994
3119	92			7	0.999532
3120	89	3		7	0.998606
3122	92		7		0.999532
3126	7			92	0.999532
3486			12	87	0.992554
3497	20	80			0.995493
3498	20			80	0.995493
3499	75	25			0.996473
3500	75			25	0.996473
3526	85		14		0.993533
3607	20	60		20	0.99255
3608	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
955	966	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain