SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16164

Length: 1438 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16164 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	trappc2l; trafficking protein particle complex subunit 2-like protein	-	-	9.0e-34	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	trafficking protein particle complex subunit 2-like protein	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	0.0	87%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sedlin	IPR006722	-	0.0	87%
Blast2go	Longin-like	IPR011012	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRL5

Fln msg:

Fln protein: MIICVAVVGLQNNPLYIQSFTDGDDALKLHYIVHCSLDVIDERVNNPKKIGSTLNETYLGLLYPSENYKVYGYLTNTKVKFILVTTDEDLKDADIRSFFRQFHAAYVDAVSNPFHVPGKRITSRAFAERVSTIVRSFGTSTII*

Protein Length: 145

Fln nts: ATGGGGATCGGCCATCCAATTTGATCGTAGTTATCACATAACGAGCTACGCTAAATTTCTTTCTTTCCGTCATTTGTCAAAACACAACATAAACACGAAGACTGATTTCTTCGATCGGGTTTCCGTCAACGTCACCCAAAACCACCGTCGGACGTTGCAGTAGCTATATAAAAGAGCAAAAAGATTTAACGCGAAGAAATAATTTTTTATTTGTGGATCGTAAAATCTACCCTCGATGTGAAAACTGTTCCTTCTCAAAACAGGACGGAGTCTGTGTTTTACCTTTTAATCGTAGACGGGGTCCGTGCTGTTACGTAGCTGGTTGCCTGGTTTCTATTCAACCAGGCGCTGTGGCTGCCTCCAGTGCTTAAGAAAGGCCGGGTCACACCATTGTCGATCTGAAGGGATAACTTCGATGCAAGAATCAGGCATTTAGAGGAGATATATGATGCAATTTCTATTGTCGGGTAGTCTATAAAGTTGCAGGAAAGG_-_ATGATAATTTGTGTTGCAGTAGTTGGTCTGCAGAATAATCCTCTGTACATACAAAGTTTCACTGATGGTGATGATGCCTTGAAGCTACACTACATTGTGCATTGTTCTCTGGATGTAATTGATGAAAGAGTAAATAATCCGAAGAAAATTGGGTCAACTTTGAATGAAACATATCTTGGACTTCTTTATCCAAGTGAAAACTATAAAGTGTATGGATATTTAACAAACACTAAGGTGAAATTCATTTTGGTCACAACAGATGAGGACCTGAAAGATGCAGATATTAGGAGTTTCTTCAGACAGTTTCATGCTGCATATGTGGACGCTGTGTCAAATCCTTTCCATGTACCAGGAAAGAGAATCACCTCACGTGCTTTTGCTGAAAGAGTTAGTACGATAGTGAGATCGTTTGGGACATCAACAATCATATAG___GCCACTCTATCTGTCTTATTTCATAAACAACAATATAGGCTGCCCTATCCGTCCTATTTGAGCTTCTCTCAAGTTTAGATGATTGGTTAAGACATTTCAGCTTTATTGAATTTTAGCTTCTGTAGTGCCTTCACAATATTTTTCCTTGTCTGCAACATGGAGTGCATGCATATTCTTCATAGTAAGAATGTCATCTGCTCTAAATTCACCACACGGATAGGTTTCTATTGACGATTTTGAAATGTGAGCATCTTGAAACTAAAATATGTTTGAGATTTGTGGAGGTTAAATTTGATCATTGGTCATGTGATAGGAAGACTTCAGCACCTTGACTTTCTTTTGGCTGATGGTATAAATGTTGCACGCAGACAACCTAAATCTTTGTTCAATGGATTTGTATTATATGCTTATCAAAAGGCATGCGATGATATAAAATCTGTCAGCACAGTTTTTATTTGGATTGGATTGGCATATAGTATTTTAATTGATAAGGTGTGATCTTTTAAGCAAAAAA

Fln Alignment:

sp_v1.1_unigene16164___MIICVAVVGLQNNPLYIQSFTDGDDALKLHYIVHCSLDVIDERVNNPKKIGSTLNETYLGLLYPSENYKVYGYLTNTKVKFILVTTDEDLKDADIRSFFRQFHAAYVDAVSNPFHVPGKRITSRAFAERVSTIVRSFGTSTII
B8LRL5_______________MIICVAVVGLQNNPLYIQSFTDGDDALKLHYIVHCSLDVIDERVNNPKKIGSTLNETYLGLLYPSENYKVYGYLTNTKVKFILVTTDEDLKDADVRSFFRQFHAAYVDAVSNPFHVPGKRITSRAFAERVSTIVRSFGTSTTI

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
358		11		88	0.999937
368	85		14		0.999981
391			20	80	0.999996
393		90	10		0.90298
394	80		20		0.999996
400		14		85	0.993533
403	85		14		0.993533
404	85		14		0.993533
407		57	42		1.0
970	75		25		1.0
1091		95		4	0.996599
1125		12	85		1.0
1126		15		84	1.0
1127	87	12			1.0
1128	84	2		2	1.0
1131			86	13	1.0
1151			6	93	0.999364
1152	90	3		6	0.997952
1153	82	3	13		1.0
1155	93		6		0.999453
1156			89	10	1.0
1157		7	92		0.999532
1158	7	7		85	0.996721
1159	92	7			0.999532
1161	85		14		1.0
1162	85	7	7		0.996721
1168	92		7		0.999532
1170			7	92	0.999532
1174	7			92	0.999664
1176		92	8		0.999718
1227	86			13	0.999973
1228	86		13		0.999973
1231	72	9	18		0.999994
1233	72	27			1.0
1235	81		18		0.999994
1237	33			66	0.997452
1239	66			33	0.997452
1240		33		66	0.997452
1241		33		66	0.997452
1242		33		66	0.997452
1244	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain