SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16151

Length: 775 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16151

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding n=1 Tax=Medicago truncatula RepID=Q2HTT3_MEDTR	-	-	8.0e-06	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	90%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	90%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	90%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
49	60			40	1.0
56		20	80		0.995493
58		20		80	0.995493
78		42		57	1.0
99		28		71	1.0
113		42		57	1.0
114	85			14	0.993533
123	42		57		1.0
141		28		71	1.0
151		10	90		0.90298
168	11			88	0.999937
186		8		91	0.999807
188	91			8	0.999807
189	86	13			1.0
192	86			4	0.999539
195		9		90	0.999842
198	90		9		0.999842
200		90	9		0.999842
202	90		9		0.999842
203	90			9	0.999842
205	9			90	0.999842
206		9		90	0.999842
207			90	9	0.999842
232	88	11			0.999937
241	27	72			1.0
264	35			64	1.0
266		29		70	1.0
276	66			33	1.0
278	80		20		1.0
290	63			36	1.0
309	11		88		0.999937
332		77		22	1.0
370		90	10		0.999898
406		40		60	1.0
417	40		60		1.0
424	10		90		0.90298
451	88	11			0.923564
452	11		88		0.923564
453	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain