SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16143

Length: 729 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16143 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase-related; K03939 NADH dehydrogenase (ubiquinone) Fe-S protein 6 [EC:1.6.5.3 1.6.99.3]	-	-	7.0e-30	78%
FL-Next	sp=NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	mitochondrial nadh ubiquinone oxidoreductase 13kd-like subunit	-	-	1.26756e-31	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	7.0e-30	78%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		7.0e-30	78%
AutoFact	Metabolic pathways	01100		7.0e-30	78%
AutoFact	NADH dehydrogenase.	EC:1.6.99.3	-	7.0e-30	78%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		7.0e-30	78%
AutoFact	Metabolic pathways	01100		7.0e-30	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.26756e-31	78%

Full-Lengther Next Prediction

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
411			3	96	0.988113
440		2		93	0.976545
459		1	3	94	0.924724
485		3		96	0.990463
502		96	3		0.991825
503		96		3	0.991825
505	3	96			0.991825
507	3		96		0.991825
510	96	3			0.980996
517		3	96		0.980996
523	95		4		0.999986
535	96			3	0.986325
536	96		3		0.986325
537	3	96			0.986325
538		96	3		0.986325
540			3	96	0.986325
541	3	96			0.986325
548	2			97	0.962263
549	97		2		0.962263
551		97		2	0.962263
554		2		97	0.962263
557		2		97	0.962263
586		2	97		0.97849
590	1	4		94	0.99991
591		4	95		0.999986
593	93	4		1	0.999943
597			3	96	0.986325
598	93	2		4	0.973796
601		6	93		0.999998
604		4		95	0.995482
607		95	4		0.995482
611	95	4			0.995881
613	4			95	0.996252
614		4		95	0.996252
615			4	95	0.996252
616	95	4			0.997218
617	92	7			0.999999
622	92			7	0.999999
633		90	3	6	0.997544
634	50	20		16	1.0
635		16	73		1.0
636	47	52			1.0
637	26	42	31		1.0
638	5	36	15	42	1.0
639			52	5	1.0
640	37	6			1.0
641	6	81			0.999943
643	12		37	50	1.0
644		77		22	0.999999
645		77	22		0.999999
646	66	11	22		0.999999
648			88	11	0.923564
649		25	75		1.0
652	75			25	1.0
653		75	25		1.0
656	25	75			1.0
657	25		75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain