SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16141

Length: 2426 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16141
CGTCGTGACCTTGGCTGTCACTCAATTTTATTATTTATTTTTTCAGGGGAAGCGCATTCCACTAAAGAGATCAGAAGGGCTCTATGCTGTTTTATCCACTTTCTTCGCTGTGTTTTAACGGAAGCGAATCCTACTGAAGACGAATGATCGACCAACGGTGAATCAATTTACAGAGAAGACAAGTCTAGGGTTTGATTTCGTTTAGAGTGTCCCCATAATGGATCCTTCCTCGCCTCCGCTGAACTATATAGTTCGAGGCCCGGAAGGGTTGTCATTATTGGTCGGTCCGCCTTTTCAAGATGAGAACCCAGTCGTAAAACTTGATAAGGCGTCATGTGCGTCTGCAAAGTTCAGCGATGATGGACGGAACCTTTTGATGATCACAGTGAATAATGTGGACATTTATGACTGTGACGGAGCTACTAAAATCCAAACAATTGATGTTCCTGGTGTCATCGCTGCAGTTTTTTCTCCACGAGGTCGATTTTTGCAGACCTATCGGCGGTCATCTGGTGGCCAAGACAAGAATTTAGTACTATGGGATGTTCAATCTGGAGTTGCTGCGCATCAATTATCGCAGAAAAATATATCTAAAACCAATTGGCCTTCATTCCAATTCAGTGAAGATGAGGCAGTTGCTTGTCGAATGGCAACCAATGAGATTCATGTTTTTGATCCGCAAAACTTTGCTAAAGGAATTGTAAATAAGATCCGCCTTCCTGGAATAGCTGGTTTGCAACTTGCTACAGCTCCTCCAACATATTTTGCGGCATATATTCCCGAATCAAAGGGAATACCAGCCAGCATTCAGATATTTAAGCGAGAGGATGTTGGCCAGGCCCAGCCTGTAGCTCGACGGAGCTTTTTTCAGTGTTCCAATGTCCAGTTAATTTGGAACCATGGATCGACTGGATTGTTGGTTATTGCACAGTCTGATGTTGACAAAAGCAATCAAAGTTACTATGGGGAGTCCAGATTACATTACTTGACGACTGATGGGAGTCACGAAGGGCTTGTGCCTCTCCGTAAGGAGGGACCTGTCCATGATGTTAAGTGGTCTCCTTCAGGAACTGAATTTGCAGTGGTTTACGGATTCATGCCTGCAAGAGCAACGTTGTTCGACAAAAAGTGCAATCCTCTGTTTGAGTTTGGAACAGGGCCTTACAATACACTCAGATGGAACCCTCATGGAAAACTTTTATGCATAGCAGGTTTTGGTAATTTACCTGGCGAAATGGCATTTTGGGATTGTTCTGCTAAAAAGTTGCTTGGAAGTTCAAAGGCTGAATGGTCAGTCACAAGTGAATGGTCGCCTGATGGACGATATTTTATGACAGCAACAACAGCTCCTCGGTTGCAAGTGGACAATGGGATCAAGATATTTTCTTATAATGGATCACTATACTTCAAGAAGATGTTTGACAAACTATATCAGGCAGAGTGGCGCCCAGCAGAGTCCACTATATATGGAGATCTTCCAGAGTTAGTAGAGCAAGTAAAGGAAAATCTGCGGATTGGGACAGCTAATGGGACAACTAATGCAGCCTCCAAAACCTCAAATCAAGTTCCAAAGATTGCTGTCGCTGCACCAAAACCTGCAGCATATCAACCACCCCATGCTAAAACTGCCTCTGCACCAAAGCCTGCATCATATCAGCCACCACATGCTAAAAGCGCTATGGCTGTTAATGCTCAGATTTTTGGCGAGACAAATTCTTCCCAAGAGACAAATAAGAATGTACTTAAAAACAAGAAGAAAAGGGAGAAACAGAGGGAGAAAAAGGCACAAGAAGCAGCTTCAGTGAATAGTAGTTGATTTTTTCTGTTTTGAGTTCGAGCTCAAATGACATAACAGCACCCATGGGTTCATCTGTATGCTGCAGTAGCTCCTGGGCGTTTTAAAATTTGAAGTATTTTTCGGTTTGGTATTTCAGATTATTCAGACCGTTGGGATTGTCAAATTTTGTTGCCGTTTTTAAGTTACTTGCGTGGATGGTCTGTCACTGCAGAATTGTGTTGAATGCATGATTGAGGAGTTAAAAGGGCAATTAAATCAATGCATCGTGAATTGGCATGCTATCAATGCAGATCGATATACTAGCCTTTCTATAAGATTTTTTTGTCGATGCTGAAGGGTTTTTTTACTGTTTTGAGTAGAGGACGTGATCCTTATTAGCAAGAGTTTCACCCAATTTTGATGAAAATAATCAATTTTTCCTTTTGAGCGTCAGGTGTGATAACCAGCCAAGGCAGTGGGTTCTTTATGGAAAACTAAGGGTGTTAATGTAGAAGTTTCGGTTGGAGTTGTAGTCCTATTATAGCAACATTATTTCTGTTCTTTTAAATGACAGCATCACCGGCTCCCCACAACCTTTGGAACATTTTATGGAGAGACATGCAACCCTTATATATATATATTTGATATC

Ace file of the UniGene sp_v1.1_unigene16141

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	eukaryotic translation initiation factor 3	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	70%
Blast2go	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	70%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNN9

Fln msg:

Fln protein: MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAVFSPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGLVPLRKEGPVHDVKWSPSGTEFAVVYGFMPARATLFDKKCNPLFEFGTGPYNTLRWNPHGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTIYGDLPELVEQVKENLRIGTANGTTNAASKTSNQVPKIAVAAPKPAAYQPPHAKTASAPKPASYQPPHAKSAMAVNAQIFGETNSSQETNKNVLKNKKKREKQREKKAQEAASVNSS*

Protein Length: 534

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATTATTTATTTTTTCAGGGGAAGCGCATTCCACTAAAGAGATCAGAAGGGCTCTATGCTGTTTTATCCACTTTCTTCGCTGTGTTTTAACGGAAGCGAATCCTACTGAAGACGAATGATCGACCAACGGTGAATCAATTTACAGAGAAGACAAGTCTAGGGTTTGATTTCGTTTAGAGTGTCCCCATA_-_ATGGATCCTTCCTCGCCTCCGCTGAACTATATAGTTCGAGGCCCGGAAGGGTTGTCATTATTGGTCGGTCCGCCTTTTCAAGATGAGAACCCAGTCGTAAAACTTGATAAGGCGTCATGTGCGTCTGCAAAGTTCAGCGATGATGGACGGAACCTTTTGATGATCACAGTGAATAATGTGGACATTTATGACTGTGACGGAGCTACTAAAATCCAAACAATTGATGTTCCTGGTGTCATCGCTGCAGTTTTTTCTCCACGAGGTCGATTTTTGCAGACCTATCGGCGGTCATCTGGTGGCCAAGACAAGAATTTAGTACTATGGGATGTTCAATCTGGAGTTGCTGCGCATCAATTATCGCAGAAAAATATATCTAAAACCAATTGGCCTTCATTCCAATTCAGTGAAGATGAGGCAGTTGCTTGTCGAATGGCAACCAATGAGATTCATGTTTTTGATCCGCAAAACTTTGCTAAAGGAATTGTAAATAAGATCCGCCTTCCTGGAATAGCTGGTTTGCAACTTGCTACAGCTCCTCCAACATATTTTGCGGCATATATTCCCGAATCAAAGGGAATACCAGCCAGCATTCAGATATTTAAGCGAGAGGATGTTGGCCAGGCCCAGCCTGTAGCTCGACGGAGCTTTTTTCAGTGTTCCAATGTCCAGTTAATTTGGAACCATGGATCGACTGGATTGTTGGTTATTGCACAGTCTGATGTTGACAAAAGCAATCAAAGTTACTATGGGGAGTCCAGATTACATTACTTGACGACTGATGGGAGTCACGAAGGGCTTGTGCCTCTCCGTAAGGAGGGACCTGTCCATGATGTTAAGTGGTCTCCTTCAGGAACTGAATTTGCAGTGGTTTACGGATTCATGCCTGCAAGAGCAACGTTGTTCGACAAAAAGTGCAATCCTCTGTTTGAGTTTGGAACAGGGCCTTACAATACACTCAGATGGAACCCTCATGGAAAACTTTTATGCATAGCAGGTTTTGGTAATTTACCTGGCGAAATGGCATTTTGGGATTGTTCTGCTAAAAAGTTGCTTGGAAGTTCAAAGGCTGAATGGTCAGTCACAAGTGAATGGTCGCCTGATGGACGATATTTTATGACAGCAACAACAGCTCCTCGGTTGCAAGTGGACAATGGGATCAAGATATTTTCTTATAATGGATCACTATACTTCAAGAAGATGTTTGACAAACTATATCAGGCAGAGTGGCGCCCAGCAGAGTCCACTATATATGGAGATCTTCCAGAGTTAGTAGAGCAAGTAAAGGAAAATCTGCGGATTGGGACAGCTAATGGGACAACTAATGCAGCCTCCAAAACCTCAAATCAAGTTCCAAAGATTGCTGTCGCTGCACCAAAACCTGCAGCATATCAACCACCCCATGCTAAAACTGCCTCTGCACCAAAGCCTGCATCATATCAGCCACCACATGCTAAAAGCGCTATGGCTGTTAATGCTCAGATTTTTGGCGAGACAAATTCTTCCCAAGAGACAAATAAGAATGTACTTAAAAACAAGAAGAAAAGGGAGAAACAGAGGGAGAAAAAGGCACAAGAAGCAGCTTCAGTGAATAGTAGTTGA___TTTTTTCTGTTTTGAGTTCGAGCTCAAATGACATAACAGCACCCATGGGTTCATCTGTATGCTGCAGTAGCTCCTGGGCGTTTTAAAATTTGAAGTATTTTTCGGTTTGGTATTTCAGATTATTCAGACCGTTGGGATTGTCAAATTTTGTTGCCGTTTTTAAGTTACTTGCGTGGATGGTCTGTCACTGCAGAATTGTGTTGAATGCATGATTGAGGAGTTAAAAGGGCAATTAAATCAATGCATCGTGAATTGGCATGCTATCAATGCAGATCGATATACTAGCCTTTCTATAAGATTTTTTTGTCGATGCTGAAGGGTTTTTTTACTGTTTTGAGTAGAGGACGTGATCCTTATTAGCAAGAGTTTCACCCAATTTTGATGAAAATAATCAATTTTTCCTTTTGAGCGTCAGGTGTGATAACCAGCCAAGGCAGTGGGTTCTTTATGGAAAACTAAGGGTGTTAATGTAGAAGTTTCGGTTGGAGTTGTAGTCCTATTATAGCAACATTATTTCTGTTCTTTTAAATGACAGCATCACCGGCTCCCCACAACCTTTGGAACATTTTATGGAGAGACATGCAACCCTTATATATATATATTTGATATC

Fln Alignment:

sp_v1.1_unigene16141___MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAVFSPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGLVPLRKEGPVHDVKWSPSGTEFAVVYGFMPARATLFDKKCNPLFEFGTGPYNTLRWNPHGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTIYGDLPELVEQVKENLRIGTANGTTNAASKTSNQVXXXXXXXXXXXXXXXXXXXTASAPKPASYQPPHAKSAMAVNAQIFGETNSSQETNKNVLKNXXXXXXXXXXXXXXXXSVNSS
B8LNN9_______________MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPGVKLDKVPCTSAKFSDDGRKLLVITTNNVEIYDCDGATEIKTIDVPGIIAAVFSPRGRFLQTYRRSSGGQDKNLVLWNVQSGVAVHQLSQKNISKANWPSFQFSEDEAIVCRMATNEIHFFDTENFAKGIVNKIRLPGIAGLQLATSPPTYFAAYIPESKGIPASIQIFERENLSQVQPVARRSFFKCSSVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGPVPLRKEGPVHDVKWSPSGSEFAVVYGFMPARTTLFDKKCNSLFDFGTGPYNTLRWNPYGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTTYGDLPELVEQVKENLRI----ETTNAAPKTSNPLSKIAVTAPKSAAYQPPHAKSVSAPKPASYQPPHAKSATAVNAQLFGEINSSQETSKNALKNKKKREKQREKKAQEAASVNTS

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
317	85		14		0.993533
388	14			85	0.993533
428	89		10		0.999919
686	83	16			0.994512
690			33	66	1.0
994	88		11		0.999937
1143		18	81		0.999994
1161		16	83		0.999991
1463		90		10	0.90298
1514		14	85		0.993533
1516	85			14	0.993533
1518		14		85	0.993533
1520	50		50		1.0
1522	83			16	0.994512
1523		83	16		0.994512
1528	83		16		0.994512
1530		16		83	0.994512
1531	16		83		0.994512
1534	80	20			0.995493
1549	20			80	0.995493
1632	25	75			0.996473
1634		75	25		0.996473
1635			25	75	0.996473
1708	25		75		0.996473
1742		75		25	0.996473
1774	85	14			0.993533
1776			85	14	0.993533
1778	85			14	0.993533
1781	85	14			0.993533
1782	85	14			0.993533
1783	85			14	0.993533
1784	85			14	0.993533
1788	85			14	0.993533
1789		85	14		0.993533
1790	85			14	0.993533
1791	85	14			0.993533
1794	85	14			0.993533
1795			85	14	0.993533
1843		83		16	0.994512
1900		16		83	0.994512
1901			16	83	0.994512
1904	83		16		0.994512
1906	83	16			0.994512
1907	83	16			0.994512
1910			16	66	0.988813
1912	83	16			0.994512
1913	83			16	0.994512
2345		71		28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2406	2418	TA TA TA TA TA TA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain