SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16134

Length: 1174 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16134

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin domain-containing protein, putative	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	atp binding protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNH2

Fln msg:

Fln protein: MDQKAVQQVLENQVLTVAKAVEEKLDEEIDRFDVDRLDEDDLEQLRERRLQQMKKMAAKKQHWLSLGHGEYQDIPSEKEFFSVAKASERVVCHFYRENWPCKVMDKHLSILAKQHLETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFNELGGTDEFSTEELEERLAKSNIIVFEGESSTSRFKSKPSSNNRSIRQSRNGDDSDSDD*

Protein Length: 219

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGACTTTTAAAATGCGAGAACACATGTTTGTGTACACCAAATTTTGAACTTCCGATTTGGATTGCGCTGCAGAGCAGAGCAGAGCAGAGAGAAGGAAATTTCAGGAAACTGAGGAGAAAT_-_ATGGACCAAAAGGCCGTGCAGCAGGTCCTTGAAAATCAAGTGCTAACTGTAGCGAAAGCGGTCGAGGAGAAGCTGGACGAAGAGATAGATCGGTTCGATGTAGATCGGCTAGATGAAGATGATTTGGAGCAACTGAGGGAGCGAAGACTGCAGCAGATGAAGAAAATGGCTGCAAAGAAGCAGCATTGGCTCTCTTTGGGTCATGGAGAGTACCAGGACATTCCGTCAGAGAAAGAATTCTTCTCCGTTGCCAAGGCAAGCGAGCGCGTCGTTTGCCATTTCTACAGAGAAAACTGGCCTTGCAAGGTCATGGATAAGCATCTAAGTATCTTGGCAAAACAACATCTGGAGACACGGTTTGTGAAAATTCATGCAGAGAAGAGCCCTTTCTTAGCAGAAAGGCTGAAAATTGTTGTTCTGCCTACTTTGGCCCTGATAAAGAATGCAAAAGTTGATGATTATGTGGTTGGTTTCAACGAGTTAGGTGGGACAGATGAATTCAGCACGGAAGAACTTGAGGAGAGGTTAGCAAAATCTAATATAATTGTGTTCGAGGGTGAATCATCAACAAGCAGATTTAAATCCAAACCATCTTCAAACAACCGGAGTATTCGGCAGAGCAGGAATGGAGATGATTCAGATTCAGATGACTGA___TAATGGTTTAGACAGATGAACATTATGTTAAGCAATGGGTTTTAGCTGAATTGTTCTCTTTCAGGAGTATCTGTAGTCTCTGCTTCTTTCCAAATTTTACATTCTAATATGCTTGTGCTGAAATATATTCAGAGAACTTCCACTTTTCTTCCAAGGTGAATGATCTGTGTCATTTCAAACTTATTGCTCATTATTTTCCATACACTGAAAGCAAGAATCAGCCAAGAAAGTTTGGCAGAATTATTGCAAGTCGATTACTTCAATTAATCATTATCTTTTGATGTTTGTAATGCCTTGACAAAAATGAACTGATTAGAGATTAATATCATTGTTAGAGTTGGTATGGATAGGGAGTCAACTCTGCAAGAAACTTCCTTT

Fln Alignment:

sp_v1.1_unigene16134___MDQKAVQQVLENQVLTVAKAVEEKLDEEIDRFDVXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLSLGHGEYQDIPSEKEFFSVAKASERVVCHFYRENWPCKVMDKHLSILAKQHLETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFNELGGTDEFSTEELEERLAKSNIIVFEGE
A9NNH2_______________MDGKAVQQVLENQVLTVAKAVEEKLDEEIGRLDVDRLDEDDLEQLRERRLQQMKKMAAKKQHWLSLGHGEYQDIPSEKEFFSVAKASERVVCHFYRENWPCKVMDKHLSILAKQHLETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGTDEFSTEELEERLAKSKIIVFEGE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
172			33	66	0.997452
892		3		89	0.998606
995		89	10		1.0
1069	10			89	0.999919
1142	16		83		0.994512
1143	16		83		0.994512
1145	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
91	111	GCAGA GCAGA GCAGA GCAGA G	21

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain