SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16130

Length: 1976 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16130
GGACAACTAGAAGGTTACTGCGCCACCGCAATCGGTCCAAGGTTCGAAGCCCGGCAAAGTGGGGTTCAACAACTTTTTAAATCCGAAGGCTCGAGAGCCTGAGGCTCTGCCAGTGCCAGTGGCAGGGAGGTTTTCCTGTGTCTGTATTCGAGCTTTCCGTATCTTCTGAGTTTTAATGGCGGACTCTTTCGTCCTGTTGCGGTCGTCACCATGATCTCGTTGTCCATCTTATCTATATATCGTGCCCTTTGCTCTCCGCCTCATGATTACTGTGTTATAATGCTGGAAATCAAGCAGGATGCCTGATGCCGAAGAGATTCAACGCCGTCGCAACGTCTCGAGTTCGAATACCGCTATGGCGAACTGCAAGGTGGTTCTGTGGATCTTTTTCTTTCTATTTCTAATGGTGTTGCTGGAGGATTTTGTTCACGCAGATCCGGAGGACGTTGCCTGTCTCTCAGGCGTCAAGGGTTCAATCCAGGATCCCGCCAACAAGCTCACGCAGTGGACCGGAGACAAGATCAAAACCCCCTGCAACGGCACCATCTCGGAGCTCGAAGGCGTGACCTGCAATAATGAGAGGGTTTTCAAGCTCAGCTTCGCGGGATTCGGCCTCGGCGGGACAATCTCGCCTTTTATTTCCAACTGCACCAATTTACAGTCCCTGGACTTGTCGGCCAACCGTTTAGCCGGCGAAATCCCGACGGAACTCCAGTATCTCGTCAATCTTGCAGTCCTGAATCTTTCTGTCAACGAGCTCGCGGGTCCGATTCCCCCGTCGTTAATCCTCTGCGCTTATCTAAACGTCATAGATCTGCACGACAACAGGCTTACCGGCAACATTCCTCCGCAGCTGGGGCTATTGACGAGGCTGAGCGCGTTCGATGTTTCGAAGAACAAACTACAGGGTATGATACCGCCATCTCTTGTCAATAAAAGTGGGGTTTTGCCGCGCTTTAATGCGAGTTCTTTTGTGGGGAACAAGGAATTGTATGGATACCCGTTGCCGACGCCCAAGAGCCACGGGCTCTCCGTGATGGCCATCGTGGGGATCGGATTAGGAAGCGGTATGCTTAGCCTGGTCGTCAGCTTTACAGCCGTTTGCATTTGGTTACGCGTGACGGAGCAGGGATATGCAGCGGAAGAGGGGAAGATCACGCATCTCATGCCTGAATATTGACAGCAGGGCCGGCCCGAGTTCGAAACCCCGCGATGGTCACTAGATACAGTAGGCTGCCGTTTTGCTTGCTGGTAAGGAGTCGTTAGGGTTACTAATCTTGAATAATTAACACGCACACTATAATGGCGAAGGCCGCAGGGCCTGGGGATTCGCGATCGAATCCTGAAACGCCCCCTTTGGCTGTTGTGAAGCCTACAGCCATGGCATAGCATTTTCATGCTCTGTAACCAAATTTTTTGTCAGGGTGAACGATGGTTTTTAATGGATTTGTATTCATGAGCAGCAGCTGCTGCTGTTTATGTATTTCATCGTTTTAGATGTGGTTCCATGCTAACAAATTCTGCTCGGCTGGGCTCGGCTCTGAGCTTATTACGTCTTTCTGTATGTATGTATGTATGGATTTATTTCTGCTGCACCTGCAGTGGGGTTTGATGTTGGGTTGCCGGCCTGTTTTCCAGTGAAGGGGAATATCAATCCCAATATCAATCCCACATGCATAGCACGTTGTTTTCGATGGTAGCTGGAGCGTGCCAATTTAAAGATGTGGAGAGTATTGTACTTTCAGAGATGTAGGTTTGTCAGTTCTTAAATACAAACAAATCTTGTACTGTAAAATTATTATCACTGCGGGAGAGGTCTGAAATGGTTGTTGGCATCCATGTGCATGAGATTAGATAACTGTCTTGCAACCATGATTCCCGGGAACTTCTTTCATTCCGCGCTAATGTCAGTGTTATAAATGTAATTTAATTTGATTTGATTTCATCTATATAGTAAACCCTCGTCATATTTTGAT

Ace file of the UniGene sp_v1.1_unigene16130

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein [Arabidopsis thaliana] dbj\|BAB09051.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD43173.1\| unknown protein [Arabidopsis thaliana] gb\|ABD19686.1\| At5g65830 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	leucine-rich repeat family protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	plastid	GO:0009536	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPV4

Fln msg:

Fln protein: MPDAEEIQRRRNVSSSNTAMANCKVVLWIFFFLFLMVLLEDFVHADPEDVACLSGVKGSIQDPANKLTQWTGDKIKTPCNGTISELEGVTCNNERVFKLSFAGFGLGGTISPFISNCTNLQSLDLSANRLAGEIPTELQYLVNLAVLNLSVNELAGPIPPSLILCAYLNVIDLHDNRLTGNIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNKSGVLPRFNASSFVGNKELYGYPLPTPKSHGLSVMAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY*

Protein Length: 295

Fln nts: GGACAACTAGAAGGTTACTGCGCCACCGCAATCGGTCCAAGGTTCGAAGCCCGGCAAAGTGGGGTTCAACAACTTTTTAAATCCGAAGGCTCGAGAGCCTGAGGCTCTGCCAGTGCCAGTGGCAGGGAGGTTTTCCTGTGTCTGTATTCGAGCTTTCCGTATCTTCTGAGTTTTAATGGCGGACTCTTTCGTCCTGTTGCGGTCGTCACCATGATCTCGTTGTCCATCTTATCTATATATCGTGCCCTTTGCTCTCCGCCTCATGATTACTGTGTTATAATGCTGGAAATCAAGCAGG_-_ATGCCTGATGCCGAAGAGATTCAACGCCGTCGCAACGTCTCGAGTTCGAATACCGCTATGGCGAACTGCAAGGTGGTTCTGTGGATCTTTTTCTTTCTATTTCTAATGGTGTTGCTGGAGGATTTTGTTCACGCAGATCCGGAGGACGTTGCCTGTCTCTCAGGCGTCAAGGGTTCAATCCAGGATCCCGCCAACAAGCTCACGCAGTGGACCGGAGACAAGATCAAAACCCCCTGCAACGGCACCATCTCGGAGCTCGAAGGCGTGACCTGCAATAATGAGAGGGTTTTCAAGCTCAGCTTCGCGGGATTCGGCCTCGGCGGGACAATCTCGCCTTTTATTTCCAACTGCACCAATTTACAGTCCCTGGACTTGTCGGCCAACCGTTTAGCCGGCGAAATCCCGACGGAACTCCAGTATCTCGTCAATCTTGCAGTCCTGAATCTTTCTGTCAACGAGCTCGCGGGTCCGATTCCCCCGTCGTTAATCCTCTGCGCTTATCTAAACGTCATAGATCTGCACGACAACAGGCTTACCGGCAACATTCCTCCGCAGCTGGGGCTATTGACGAGGCTGAGCGCGTTCGATGTTTCGAAGAACAAACTACAGGGTATGATACCGCCATCTCTTGTCAATAAAAGTGGGGTTTTGCCGCGCTTTAATGCGAGTTCTTTTGTGGGGAACAAGGAATTGTATGGATACCCGTTGCCGACGCCCAAGAGCCACGGGCTCTCCGTGATGGCCATCGTGGGGATCGGATTAGGAAGCGGTATGCTTAGCCTGGTCGTCAGCTTTACAGCCGTTTGCATTTGGTTACGCGTGACGGAGCAGGGATATGCAGCGGAAGAGGGGAAGATCACGCATCTCATGCCTGAATATTGA___CAGCAGGGCCGGCCCGAGTTCGAAACCCCGCGATGGTCACTAGATACAGTAGGCTGCCGTTTTGCTTGCTGGTAAGGAGTCGTTAGGGTTACTAATCTTGAATAATTAACACGCACACTATAATGGCGAAGGCCGCAGGGCCTGGGGATTCGCGATCGAATCCTGAAACGCCCCCTTTGGCTGTTGTGAAGCCTACAGCCATGGCATAGCATTTTCATGCTCTGTAACCAAATTTTTTGTCAGGGTGAACGATGGTTTTTAATGGATTTGTATTCATGAGCAGCAGCTGCTGCTGTTTATGTATTTCATCGTTTTAGATGTGGTTCCATGCTAACAAATTCTGCTCGGCTGGGCTCGGCTCTGAGCTTATTACGTCTTTCTGTATGTATGTATGTATGGATTTATTTCTGCTGCACCTGCAGTGGGGTTTGATGTTGGGTTGCCGGCCTGTTTTCCAGTGAAGGGGAATATCAATCCCAATATCAATCCCACATGCATAGCACGTTGTTTTCGATGGTAGCTGGAGCGTGCCAATTTAAAGATGTGGAGAGTATTGTACTTTCAGAGATGTAGGTTTGTCAGTTCTTAAATACAAACAAATCTTGTACTGTAAAATTATTATCACTGCGGGAGAGGTCTGAAATGGTTGTTGGCATCCATGTGCATGAGATTAGATAACTGTCTTGCAACCATGATTCCCGGGAACTTCTTTCATTCCGCGCTAATGTCAGTGTTATAAATGTAATTTAATTTGATTTGATTTCATCTATATAGTAAACCCTCGTCATATTTTGAT

Fln Alignment:

sp_v1.1_unigene16130___MPDAEEIQRRRNVSSSNTAMANCKVVLWIFFFLFLMVLLEDFVHADPEDVACLSGVKGSIQDPANKLTQWTGDKIKTPCNGTISELEGVTCNNERVFKLSFAGFGLGGTISPFISNCTNLQSLDLSANRLAGEIPTELQYXXXXXXXXXXXXXXAGPIPPSLILCAYLNVIDLHDNRLTGNIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNKSGVLPRFNASSFVGNKELYGYPLPTPKSHGLSVMAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY
A9NPV4_______________MPDAEENHHHRDVSSSNPAMANGKGVLWIFFLLSLMVLLEDFVHADPEDVACLSGVKGSIQDPANRLMGWTGDKLKTPCNGTISELEGVTCNNERVFKLSFAGFGLVGSISPFISNCTNLQSLDMSANRFTGEIPTELQYLVNLAVLNLSVNELTGLIPPSLILCAYLNVIDLHNNRLTGSIPPQLGLLTRLSAFDVSKNKLQGMIPPSLVNRSGVLPRFNASSFLGNKELYGYPLPTPKSHGLSVIAIVGIGLGSGMLSLVVSFTAVCIWLRVTEQGYAAEEGKITHLMPEY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
723	86			13	0.999973
796		81		18	0.999994
872	83	16			0.999991
1115		88		11	0.923564
1130			87	12	0.992554
1131	87			12	0.992554
1134		12	87		0.992554
1137		87	12		0.992554
1140			87	12	0.992554
1143		12		87	0.992554
1145			12	87	0.992554
1148	87	12			0.992554
1194		85	14		0.993533
1195	85		14		0.993533
1246	25		75		0.996473
1432	50		50		1.0
1607	29	70			1.0
1801	12		87		0.992554
1802	12		12	75	0.975346
1857	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1561	1578	TGTA TGTA TGTA TGTA TG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain