SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16126

Length: 2524 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16126
GGCGTTAGAAATTATGTATTTATTTAATCCCAAAACATTTTATTTCCATGTATTTTCAGAGCAGTATTCTGATGACTGGAGTGAAGAAGGAAGAAGTTGACACAGCTATGTTTGCCCTTGTCCTCTAGCTTGTGGTCAGGTGGTGCTTGCATTTAGGGGCTTATTGTCAGGGAAAGGAGCTACAGTGGTGCACTTTCAGAGCTTGGTACCCTCACATCCTGCTGGTGAGTGCACGCTCTGAAGTGAGTTCTGCTTTCGTTTTTCTCTCCATTCAAGAACTTCCAGCTTACCCGTTTTCATGTGAGAGTAGTGGGTAGCCCTAGACAGTGTAGAAAAATCAGTTCTTGTAATACCGTTTTTTGACGCTGCGCAGTATGAGGGTCCCTGGGTCTGGTTTCAGTTGAGGGTAAGGGCATTTTGTGTTTTCTGGTTTTGCAGTCCACCCCCAAGTGAACCTGGGCTCTGTTATTTTCTTTCCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGCATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGGTCAGGGAAAAAGCAGCAGTTGGCTGCATTAGGATCAGCGGGAGTGGGATTCACTCCACATGTGATCACGATAGCATCAGGGGAGGATGTAGCGTCAAAAATAATGTCATTTTCACAGCAAGGACCTAGAGCAGTATGCATCCTCTCGGCAAATGGTGCAATATCTAATGTGACCCTTCGCCAGGCTGCCACGTCTGGTGGCACTGTGACATATGAGGGCCGCTTTGAAATACTTTCCTTGTCAGGTTCATTTTTGCTTACAGAAAATGGTGGAACCCGCAGTAGAACTGGTGGTCTTAGTGTTTCACTGGCAAGCCCTGATGGTCGTGTTCTAGGTGGAGGAGTGGCTGGATTGTTAATGGCAGCCAGTCCTGTACAGGTTGTTGTAGGGAGCTTCATTGCAAATGGTCGAAAGCCTCGGCCAGCCAATCCTGATTCTTCTGCTGGACCAGCACAAGCAACTGCTTCTGGAGGAGCTGCGACTGCTAGTCCTGTTTCTCGGGGAACTATGAGCGAGTCCTCTGGAGGTCCAGGTAGTCCAATGAATCAAAGCATTGGAGATTTTAATAGTACACCTTCACAGCCAGTCCAGAACATGGCCTCCTACCAGTCAGTGGGTTGGCAAGGCTCTCAGTCTATGGGAGAGCCTAGACGTAACACGGATATTAACATGTCTTTGCCCGGTGGATAATTATAGAAGCCTTAGGATCTTTCCCTGTGGCTGAATATTGACCACATTTATCAGTTAATCGGCACTGACTACCAACAGGTTTTAAGATGGGCTGCAATTGTTTTCAAACTAACAGATGGAAATTTATAGGTTTCTCAGAACAGATGCAACTTCTCCGCTAGTTGTCACCTGTTTTATTTTAAGAACTAAGACCCCACGTTATATTTCATGCTTGGCAGCATAGACAAAGAACTCTTCGTTTTTGTTCTTCGAAGGATGATGGTACTGCTATTCAGAGGATCATGCAAATCTTTACTGGTCTGCGGACCATGCATAGCCTTTGATTTGGGATACTCAATTGTATTGTTATTGTGAATCGCCTGACTTGTACTTTGACTGATTGTCTATCGCTAATATTTCATATACCCAATTACTGACC

Ace file of the UniGene sp_v1.1_unigene16126

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	dna binding	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF296	IPR005175	-	0.0	81%
Blast2go	AT hook, DNA-binding motif	IPR017956	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK79

Fln msg: your sequence is shorter than subject: 361 - 383

Fln protein: MEGRETMGLPPSSGMTAGLDSFTPVSQRGHAGGALHTGMAPVMRPHPTSGVTIASNPNNSSSSPFHTDSSTAIVSHGMSMSMQKLEPMKRKRGRPRKYGPDGNMALALAPLSSTPGPFSPSQKRGRGRPPGSGKKQQLAALGSAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDGRVLGGGVAGLLMAASPVQVVVGSFIANGRKPRPANPDSSAGPAQATASGGAATASPVSRGTMSESSGGPGSPMNQSIGDFNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG*

Protein Length: 362

Fln nts: GGCGTTAGAAATTATGTATTTATTTAATCCCAAAACATTTTATTTCCATGTATTTTCAGAGCAGTATTCTGATGACTGGAGTGAAGAAGGAAGAAGTTGACACAGCTATGTTTGCCCTTGTCCTCTAGCTTGTGGTCAGGTGGTGCTTGCATTTAGGGGCTTATTGTCAGGGAAAGGAGCTACAGTGGTGCACTTTCAGAGCTTGGTACCCTCACATCCTGCTGGTGAGTGCACGCTCTGAAGTGAGTTCTGCTTTCGTTTTTCTCTCCATTCAAGAACTTCCAGCTTACCCGTTTTCATGTGAGAGTAGTGGGTAGCCCTAGACAGTGTAGAAAAATCAGTTCTTGTAATACCGTTTTTTGACGCTGCGCAGTATGAGGGTCCCTGGGTCTGGTTTCAGTTGAGGGTAAGGGCATTTTGTGTTTTCTGGTTTTGCAGTCCACCCCCAAGTGAACCTGGGCTCTGTTATTTTCTTTCCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGC_-_ATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGGTCAGGGAAAAAGCAGCAGTTGGCTGCATTAGGATCAGCGGGAGTGGGATTCACTCCACATGTGATCACGATAGCATCAGGGGAGGATGTAGCGTCAAAAATAATGTCATTTTCACAGCAAGGACCTAGAGCAGTATGCATCCTCTCGGCAAATGGTGCAATATCTAATGTGACCCTTCGCCAGGCTGCCACGTCTGGTGGCACTGTGACATATGAGGGCCGCTTTGAAATACTTTCCTTGTCAGGTTCATTTTTGCTTACAGAAAATGGTGGAACCCGCAGTAGAACTGGTGGTCTTAGTGTTTCACTGGCAAGCCCTGATGGTCGTGTTCTAGGTGGAGGAGTGGCTGGATTGTTAATGGCAGCCAGTCCTGTACAGGTTGTTGTAGGGAGCTTCATTGCAAATGGTCGAAAGCCTCGGCCAGCCAATCCTGATTCTTCTGCTGGACCAGCACAAGCAACTGCTTCTGGAGGAGCTGCGACTGCTAGTCCTGTTTCTCGGGGAACTATGAGCGAGTCCTCTGGAGGTCCAGGTAGTCCAATGAATCAAAGCATTGGAGATTTTAATAGTACACCTTCACAGCCAGTCCAGAACATGGCCTCCTACCAGTCAGTGGGTTGGCAAGGCTCTCAGTCTATGGGAGAGCCTAGACGTAACACGGATATTAACATGTCTTTGCCCGGTGGATAA___TTATAGAAGCCTTAGGATCTTTCCCTGTGGCTGAATATTGACCACATTTATCAGTTAATCGGCACTGACTACCAACAGGTTTTAAGATGGGCTGCAATTGTTTTCAAACTAACAGATGGAAATTTATAGGTTTCTCAGAACAGATGCAACTTCTCCGCTAGTTGTCACCTGTTTTATTTTAAGAACTAAGACCCCACGTTATATTTCATGCTTGGCAGCATAGACAAAGAACTCTTCGTTTTTGTTCTTCGAAGGATGATGGTACTGCTATTCAGAGGATCATGCAAATCTTTACTGGTCTGCGGACCATGCATAGCCTTTGATTTGGGATACTCAATTGTATTGTTATTGTGAATCGCCTGACTTGTACTTTGACTGATTGTCTATCGCTAATATTTCATATACCCAATTACTGACC

Fln Alignment:

sp_v1.1_unigene16126___MEGRETMGLPPSSGMTAGLDSFTPVSQRG-----HAGGALHTGMAPVMRPHPTSGVTIAXXXXXXXXXXXXXXXXTAIVSHGMSM------SMQKLEXXXXXXXXXXXXXXXXNMALALAPLSSTPGPFXXXXXXXXXXXXXXXXXXQLAALG-----SAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDXXXXXXXXXXXXXXXSPVQVVVGSFIANGRK--PRPANPDXXXXXXXXXXXXXXXXXXXVSRGTMSE-----XXXXXXXXMNQSIGD--FNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG
B8LK79_______________MESRESMGLSGPGSFGAILHRGVSSSPAGMPTPASAPAAIHTPAA--LRPVVSSVIGVASNPNNPSSSSYATESPATLVPHGVNMGVGMAVSVARTEPLKRKRGRPRKYGPDGSMALALAPLSSVQGSLSPTQKRGRGRPPGSGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMSFSQQGPRAVCILSANGAISHVTLRQPATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAVAIPISKGAVNDSSGGKTGGAGNPSLNQNTGASVSNTSAQQPIQNMATYQSMGWPGSQSTGDLRRNTDINIPLPGG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1419		14	85		0.993533
1478	85		14		0.993533
1485		90	10		0.90298
1486	90		10		0.90298
1487		90	10		0.90298
1971		85		14	0.993533
2014	75		25		0.996473
2064	42		57		1.0
2304		45	54		1.0
2338			90	10	0.90298
2515		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain