SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16118

Length: 1327 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16118

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os10g0486900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XD86_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	heat shock protein 70 -interacting	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	77%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL10

Fln msg:

Fln protein: MVTIEPAIEPASEDVADQRIPKKPSAYGENSQGLNNSEALQSNGVPRELKKGAEAEGHLDADREAEGWETASEGGNEDEAPSVSAHIEDSYEDAMTDEEQKQRSLAQANEAKAEGNRSFAAGEYEAALAHYASALEIAPEDPMSNEVRSMCFANRAVCCYKLRKYDETVKESTKALELNPAYLKALVKRAEAHERLERFEEAIADMNKVLELEPSNEQARRTIIRLEPLAAEKRAKLQAEMMGKLKDLGNSVLGRFGMSVDNFKAVKDPNSGSYSISYQR*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTAAATGCATCCAAAGCAAAGATCGAGAACAAGCACCTCGTCATTGTTTTTTTCCTACTAAATCTGCGATCCATTCTCTGTTGATTCTGGTTTTTCAGCACCCACACGAA_-_ATGGTGACCATAGAGCCCGCCATCGAGCCCGCCAGCGAAGATGTCGCAGATCAGAGAATCCCCAAGAAACCGAGCGCCTACGGAGAAAATTCACAGGGTTTAAACAATTCAGAAGCCCTGCAATCTAATGGGGTGCCGAGAGAGCTCAAGAAAGGTGCAGAAGCGGAGGGTCATTTGGATGCGGACAGGGAGGCCGAAGGGTGGGAGACTGCCAGCGAAGGTGGAAATGAAGACGAAGCCCCCTCGGTCTCTGCACATATCGAAGATAGCTATGAGGACGCCATGACAGACGAAGAACAGAAACAGAGGTCCTTAGCTCAAGCCAATGAGGCAAAGGCTGAAGGAAATAGATCATTTGCAGCTGGAGAATATGAAGCAGCTTTGGCACACTATGCAAGTGCACTGGAAATTGCCCCAGAGGATCCCATGTCCAACGAAGTCCGTTCAATGTGTTTTGCCAATCGTGCTGTTTGCTGCTACAAACTGAGAAAATATGATGAAACAGTGAAGGAGAGTACAAAAGCACTTGAGCTAAATCCAGCATATTTAAAGGCATTAGTCAAAAGGGCAGAGGCCCATGAAAGACTTGAACGGTTTGAGGAAGCTATTGCAGATATGAATAAGGTACTCGAGTTGGAACCTTCTAATGAGCAAGCAAGGAGGACTATCATTCGGTTAGAGCCATTGGCTGCGGAGAAACGTGCGAAGCTTCAAGCGGAGATGATGGGGAAGCTAAAAGATCTTGGAAACTCAGTCTTAGGACGCTTTGGCATGAGTGTTGATAACTTCAAGGCTGTCAAAGACCCCAATTCTGGATCCTATTCAATCTCATATCAACGCTGA___TCTAATATTTTGCAAAGCTTGTTTATTTTTGCCATAGTTTTTGGGACAGCTATGTAGATTCTAGATATGTAAATGTTTTAGATCCTTAGGAAGATGTTATCATGGAAATAGCTTGAGTTTAATATCCATTCAATATTTCAGAGTGGTCCAAGTAGCTTTCTGCTATGGATGATAGCTTTACGTAAGTATCACGTAAAAATACGGTAATGGTGTGCACTCAAGGATATTTGCTTTCTGATAATGAAGAAATAAATATTTATTTGTCCTGGGAGTAGTAATATTATTGAGATTTATGCAGTAGAATACATTTGTCATCGATAGTTTTGCGCAATGCAAAATATATTTC

Fln Alignment:

sp_v1.1_unigene16118___IEPASEDVADQRIPKKPSAYGENSQGLNNSEALQSNGVPRELKKGAEAEGHLDADREAEGWETASEGGNEDEAPSVSAHIED--SYEDAMTDEEQKQRSLAQANEAKAEGNRSFAAGEYEAALAHYASALEIAPEDPMSNEVRSMCFANRAVCCYKLRKYDETVKESTKALELNPAYLKALVKRAEAHERLERFEEAIADMNKVLELEPSNEQARRTIIRLEPLAAEKRAKLQAEMMGKLKDLGNSVLGRFGMSVDNFKAVKDPNSGSYSISYQR
B8LL10_______________IEPACEDVTDQGSSMKPNTYEENSQGLKNSEVLHSNGAPRELKKGAEAEGHVDADREVEGWETASEGGNEEEAPSVSAHIEDRDSYEDAMTDEEHKQRSLAQANEAKAEGNRSFAAGEFEAALAYYASALEIAPEDPMANEVRSMCFANRAVCCYKLSKYDETVKESTKALELNPAYIKALIKRAEAHERLEQFDEAIADMNKVLELEASNEQARRTIIRLEPLAAEKREKLKEEMIGKLKDLGNSILGRFGMSVDNFKAVKDPNSGSYSISFQR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
311	80		20		1.0
421	91			8	0.999766
423		8	91		0.999766
424	91		8		0.999766
429		91		8	0.999807
432	91		8		0.999807
433			91	8	0.999807
434	91		8		0.999807
440	91		8		0.999807
441	91	8			0.999807
633		13		86	0.999973
1014		85	14		0.993533
1122	16		83		0.994512
1157	5	94			0.998397
1249	20		80		0.999996
1250	20		80		0.999996
1251	20		80		0.999996
1253	11		88		0.923564
1254	11			88	0.923564
1257		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain