SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16117

Length: 1366 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16117

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L4 n=1 Tax=Prunus armeniaca RepID=RL4_PRUAR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein l4 l1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	88%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	88%
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%
Blast2go	cell wall	GO:0005618	Cellular Component	88%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L4/L1e	IPR002136	-	88%
Blast2go	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	IPR013000	-	88%
Blast2go	Ribosomal protein L4 domain	IPR023574	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK49

Fln msg:

Fln protein: MAARAAARPLVSVVNVESEAPEGGGDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALSASAIPALVMARGHRIESVPELPLVLSDDVEGVEKTSAALKVLKKVGASADVEKAKKSLSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVKPINRKIKRKPLKKNPLKNLGSLLKLNPHAKTARRMALLAEEQRAKAKQEKLDKKRKEPKADKDAIKAAGKSWYKTMVSDSDYTEFENFSKWLGVTQ*

Protein Length: 408

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTAAAACCCTAACAAGGCCAACACGGGTTTGGTTTCCTGAATCGCAGAACTTGCACAAAGGGAGGAGAAGAAAGCTGACCTTATTCACCATTAACAGTAGCAAGCATCA_-_ATGGCGGCCAGGGCAGCAGCTCGTCCTCTGGTCTCAGTGGTGAATGTAGAAAGCGAAGCCCCCGAAGGGGGCGGTGACGCTGTTCCCCTTCCGGACGTACTGAAGGCGTGCATCAGGCCTGATATTGTGGAATTCGTTCACGCAAACATGGCCAAAAATAAACGCCAACCCTACGCCGTCAGCAAGAAGGCTGGTCATCAGACTTCCGCAGAGTCATGGGGAACGGGGCGGGCGGTTTCCAGAATTCCCCGCGTTGCCGGAGGGGGAACACACAGAGCTGGCCAGGGAGCCTTCGGCAACATGTGCCGTGGCGGCAGGATGTTTGCTCCCACGAAAATATGGCGAAAATGGCACCGGAAAATCAACTTAAACCAGAAGAGACACGCGGTGGTCTCTGCTCTGTCGGCGTCTGCGATCCCCGCCCTCGTCATGGCCCGAGGTCACAGGATCGAATCCGTCCCGGAGCTGCCGCTCGTTCTCAGCGATGACGTCGAAGGGGTCGAGAAAACCTCGGCTGCTCTGAAGGTTTTGAAGAAGGTGGGTGCTTCTGCTGACGTGGAAAAGGCCAAGAAAAGTCTCAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGACGGTATGTTTCACGCAAGGGTCCTTTGATTGTTTATGCCACTGAAGGGGCTAAACTTGTTAAGGCTTTCAGGAATATTCCGGGTGTGGAGATCGCGTGCGTTGATAGATTGAATTTGCTGAAGCTTGCTCCTGGTGGGCATTTGGGTCGTTTCATTATATGGACAAAGTCTGCTTTTGAGAAGCTTGATAGTACTTTCGGGGGTTTTGAGAAGGAGTCTTTGCAGAAGAAGGGATATGTTCTGCCTCGTGCAAAGATGGTCAATTCGGATCTGGCAAGGATCGTAAATTCTGATGAAATCCAGTCTGTTGTGAAACCCATCAACAGGAAAATTAAGCGGAAGCCGCTGAAGAAGAACCCGCTTAAGAACTTAGGTTCTCTTCTAAAGCTCAACCCACATGCGAAAACTGCAAGGCGAATGGCTCTCTTGGCCGAGGAGCAGCGTGCCAAGGCCAAACAGGAGAAGCTGGACAAGAAGAGGAAGGAACCAAAGGCTGATAAGGATGCAATCAAGGCAGCAGGAAAATCATGGTACAAAACCATGGTTTCAGATAGTGACTACACGGAATTTGAGAACTTTTCTAAATGGCTTGGTGTGACACAGTAA___AGCAATTGG

Fln Alignment:

sp_v1.1_unigene16117___PLVSVVNVESEAPEGGGDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALSASAIPALVMARGHRIESVPELPLVLSDDVEGVEKTSAALKVLKKVGASADVEKAKKSLSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAKTARRMALLAEEQRAKAKQEKLDKKRKEPXXXXXXXXXXXXSWYKTMVSDSDYTEFENFSKWLGVTQ
B8LK49_______________PLVSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVRPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLADEQRAKAKQEKLDKKRKEPKENKDAIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1165	95		4		0.997494

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain