SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16111

Length: 1677 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16111

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dna binding	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	88%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	88%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	88%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	88%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	88%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	88%
Blast2go	Protein of unknown function DUF3594	IPR021998	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU96

Fln msg:

Fln protein: MEGAAGPYNGRTVEEVFKDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGLPSETWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFEKNDRRRLFNMINELPTIFEVVTGTVKKQTKEKPSVTNHNGNKSKPNAKVQRVSESQTKVPKLQPPHKEEEETPDEEDEEEHGDTLCGACGENYASDEFWICCDMCEIWFHGKCVKITPARAEHIKQYKCPSCSSSTKRARV*

Protein Length: 260

Fln nts: ATGGGGGAGTAAACAGAATTGGAATCTGCCTTCTTAAGCAGTTATCCCTAGCCCTCATCGCTTAAGTGGCGGTCACACGGAATAGCTGGGACCAAACCGAAGGACTTCACTTTCCCTCCTTAAATTCTCCTGCGCCCCTGCGCTTCTCTACAGTTTGCTCTGCGCTTCTCTATTTTAGAGGGATTTTCATCCCATTCCTCCTTTCAATCGTACAAGGAAAAAAGTCGATTGACTGAGGCCGCGAGGATGAGGCATCCGTAATTCTCCTTTGTGGAATGCTTTGGAACAAGTTTTTGTCTGAGAAATTCCGCCAGAAATCGACGACGCAGGTAACCTGTTTGAAGATTTGTGGCGCAGAATCGACTCAGAAGC_-_ATGGAGGGCGCTGCTGGACCTTACAATGGCCGCACTGTCGAAGAAGTTTTCAAGGATTTCAAGGGCCGTCGAGCTGGAATGATCAAAGCCCTCACCACTGATGTGGAGGAATTTTACCAGCAATGTGATCCAGAGAAAGAGAACTTGTGTCTGTATGGCCTTCCAAGCGAAACATGGGAAGTTAATCTACCTGCTGAAGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTGGGAATTAACTTTGCAAGGGATGGAATGCAAGAAAAGGATTGGCTATCTTTGGTAGCTGTTCACAGTGATGCATGGTTACTTGCAGTGGCATTCTATTTTGGTGCGCGCTTTGGATTTGAGAAAAATGACAGGAGGCGTCTTTTCAACATGATCAATGAGCTTCCTACGATATTTGAGGTGGTGACTGGAACTGTAAAGAAGCAAACAAAAGAGAAACCAAGTGTAACCAATCACAATGGCAATAAAAGCAAACCTAATGCAAAAGTGCAGCGTGTTTCTGAATCACAGACAAAAGTACCGAAGTTGCAACCTCCACACAAGGAAGAGGAAGAGACCCCTGATGAAGAGGATGAGGAAGAGCATGGCGATACACTCTGCGGAGCCTGTGGTGAAAATTATGCCTCTGACGAGTTTTGGATCTGTTGTGACATGTGTGAGATATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCAAGAGCAGAACATATTAAACAGTACAAATGCCCGTCTTGCAGTAGCAGCACTAAAAGGGCCCGAGTTTGA___GGCTGGCATATACAGTACTGTTTTTGTCTGTATTAGTCTGAGACTGATGTTTCCACATGGCCGCTTCTGGTGCGGCGACATTTATTGTGATTCACTTGCAATCAGAAGGCTTGTAAATTTGGTTTGATGCAGGTTGGGAAATTTGCCCCCGGGAATGCTGTATGCAGCATATGTATAAATATTCAGTTAGCTGTTTTTATTTTTATTTTTAGGACTGGTTCAGTTTCAGAAGATTTTGATCTAAATCAGCAAAATTCGTTTGGCAGACCCTGCTGACAATGTAGGTATGTGCTGTGATTACTTACAGCGTTTTTCCTCTTTAAATTGGTAAAAAGTTACCCAGTCTAGAATTTAAAATCTTACTTGCTATTTGGTTGGATCAACATGTTTTTCAATGGTTGAAGATAGTCAATAGAAGCATGTATGTTTTGTGTGGCGTTCTGGTGATTTTCACAATTGTTTGAAATGAACTGGTTCTTAGTGGAACCATTGTAAGAACGAACTGGCCCTTAGTTTCTTGATGCAGAT

Fln Alignment:

sp_v1.1_unigene16111___MEGAAGPYNGRTVEEVFKDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGLPSETWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFEKNDRRRLFNMINELPTIFEVVTGTVKKQTKEKPSVTNHNGNKSKPNAKVQRVSESQTKVPKLQPPHKXXXXXXXXXXXXXHGDTLCGACGENYASDEFWICCDMCEIWFHGKCVKITPARAEHIKQYKCPSCSSSTKRAR
A9NU96_______________MEGAAGPHNGRSVEEVFKDFKGRRAGMIKALTTDVELFYQQCDPEKENLCLYGLPIETWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFEKNDRRRLFNMINELPTIFEVVTGTVKKQTKEKSSVINHNGNKSKPNAKL-RVSESQTKVSKLPPPPKEEDDTLDEEDEEEHGDALCGACGEYYASDEFWICCDMCEVWFHGKCVKITPARAEHIKQYKCPSCSSSTKRAR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
644	66	33			0.997452
645			33	66	0.997452
647		33	66		0.997452
649		66		33	0.997452
650			33	66	0.997452
656			6	93	0.99903
1331	90		6		0.997544
1358	85			14	0.993533
1359	16			33	1.0
1423		63		36	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1343	1360	TTTTTA TTTTTA TTTTTA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain