SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16110

Length: 658 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16110

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II subunit Rpb10; K03007 DNA-directed RNA Polymerase II subunit L	-	-	7.0e-34	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	2.19378e-34	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	2.19378e-34	96%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	2.19378e-34	96%
Blast2go	Pyrimidine metabolism	00240	2.19378e-34	96%
Blast2go	Metabolic pathways	01100	2.19378e-34	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	2.19378e-34	96%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	2.19378e-34	96%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	2.19378e-34	96%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.19378e-34	96%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.19378e-34	96%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	2.19378e-34	96%
Blast2go	DNA-directed RNA polymerase V complex	GO:0080137	Cellular Component	2.19378e-34	96%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	2.19378e-34	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA polymerase, subunit N/RPB10	IPR000268	-	2.19378e-34	96%
Blast2go	Homeodomain-related	IPR012287	-	2.19378e-34	96%
Blast2go	RNA polymerases, subunit N, zinc binding site	IPR020789	-	2.19378e-34	96%
Blast2go	RNA polymerase subunit RPB10	IPR023580	-	2.19378e-34	96%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
422		86		13	1.0
424	35	25			1.0
426	35			25	1.0
427	26			73	1.0
428	75			20	1.0
436		55		44	1.0
553	30		69		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
422		86		13	1.0
424	35	25			1.0
426	35			25	1.0
427	26			73	1.0
428	75			20	1.0
436		55		44	1.0
553	30		69		1.0

Position	A %	C %	G %	T %	Probability
422		86		13	1.0
424	35	25			1.0
426	35			25	1.0
427	26			73	1.0
428	75			20	1.0
436		55		44	1.0
553	30		69		1.0

Position	A %	C %	G %	T %	Probability
422		86		13	1.0
424	35	25			1.0
426	35			25	1.0
427	26			73	1.0
428	75			20	1.0
436		55		44	1.0
553	30		69		1.0