SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16104

Length: 1850 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16104

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GEM-like 1 n=2 Tax=Vitis vinifera RepID=A7LH72_VITVI	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	gem-like 1	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXA4

Fln msg:

Fln protein: MNKNQGSCPYGYPPTQSEGGGRMGTWVMGVPADPSSHPVNQQAATWVADESMPSNTTTTQHYMQHSGPPPAVTGTVTYHQNIPPPSNPYVATTPATGSTGRRPMDKIADVLNKCGKKLEENTRKVEDFAGNLWQHLKIGPSLTDTAMGRIAQGTKVLTEGGYENVFRRTFETIPGEKLQKAYACYLSTSAGPVIGTLYLSTVKLAFCSDSPLASYPYPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFWFMGFVTYDKALKNLQEALRHQSFQVSIT*

Protein Length: 293

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTACGATTGCCATATCGAGATGTGGAGAAAATTCCAGAAAACCTTACACTCTTGTCGCTACGAATTTCTGATGGAGATTACTTAGAGAAATATTTATATTCACAACAAAAGGAAGCTGGGCAGGGAAAGAAAACATCGACAGGAATAAAATGTGACAAGGACAAACCAATCTACGTCACATATTCTACAACAGTTTGTTGGGCCGTCATAGCGTAAGAATCAGTAGATACCAAGGTCCTCTGTTGCCTTTCGGACGAGTTGATTTCTACATATCAGGGGAAATTTCACCGTTCGGAGCCTCTAAATTCATACCCACATTCGAAAATTTGGACCGCCTGCCATTCAGGTCGGAAAAG_-_ATGAACAAAAACCAGGGTTCATGCCCATATGGATACCCACCAACACAGAGTGAAGGTGGCGGTAGAATGGGTACATGGGTTATGGGAGTTCCTGCTGACCCAAGTTCCCATCCTGTGAATCAGCAGGCAGCCACTTGGGTTGCAGATGAATCAATGCCCTCTAATACGACAACAACACAACATTATATGCAGCATTCAGGACCTCCTCCGGCTGTGACTGGTACCGTTACTTACCATCAGAACATCCCTCCTCCGAGCAATCCTTATGTCGCAACTACGCCGGCCACTGGATCTACTGGAAGGAGGCCTATGGACAAGATTGCCGACGTTTTAAATAAATGCGGCAAGAAATTGGAGGAAAACACTAGAAAGGTAGAGGATTTTGCTGGGAACCTTTGGCAACACTTAAAAATTGGCCCGAGTCTTACAGACACAGCTATGGGGAGAATCGCACAAGGAACCAAAGTTCTTACTGAAGGTGGATATGAAAATGTTTTTCGAAGGACTTTTGAGACTATTCCAGGGGAAAAACTTCAGAAGGCATATGCATGCTATTTGTCAACTTCTGCAGGGCCTGTTATAGGAACACTCTATTTGTCTACTGTGAAGCTTGCTTTTTGCAGTGATAGTCCTCTTGCTTCTTATCCTTATCCCGGTCAGACTGAATGGAGTTATTACAAGGTCACCGTGCTGCTAAGCCAGCTTAAGGCTGTTAATCCCTCTGCAAACAGGATGAACCCTGCGGAAAAATACATTCAAATCATTACAACAGATGATCATGAATTTTGGTTCATGGGTTTTGTTACCTATGACAAAGCATTAAAGAATCTCCAGGAAGCATTGAGACATCAAAGTTTCCAAGTTTCTATTACATAG___ACATGAAGATATTTGGTATTGTTTTGCGAGGTTCCTTTTGTGTATGGCAATAATAGCCTTATCTTGGAAAATTGTTATATTCATGTCTATTGCCCTCTAGAGAAAATCCATGTAAATTTCATGTGCAATATTCACACGAGTTTTCCAAATGGCATTTAAGTCAGTGAAACGAGGAAATGTGGACGAGGGTGTTACGTCTCTGTCCCTTTACTTTTTCATGCGTCTTATTTTGTACATCCTGTCAAAATACATACCATTTGCATATAATGGATAACGTTTAAGGTGTTTTACTATTTTTGGCATGTGTCAGAGCCTTTTAAAGCGCATGCCAGTTTAACAAGGAGAAGACAGAAAAAGCTATTATGTATATTTAAGTTAAGAAAAATTCTAGTATCTAGGTGTTTTAAATTGTCATTTTTTTCCCATTTGGTTCAGATTGTTTTCTATGGGCTCTTGTTTGGACATTTTCTCAAAATGTAAGATCGTCTTGCATGGGGCATTAAGTTGCACATGGTTAATAGGTGTATGCTATTTTTGAAAAAAGTGTTGTATACAGTGTGCCTTTCGAGTATGTTTACGTGGCATACTATTGC

Fln Alignment:

sp_v1.1_unigene16104___MNKNQGSCPYGYPPTQSEGGGRMGTWVMGVPADPSSHPVNQQAATWVADESMPSNTTTT-QHYMQHSGPPPAVTGTVTYHQNIPPPSNPYVATTPATGSTGRRPMDKIADVLNKCGKKLEENTRKVEDFAGNLWQHLKIGPSLTDTAMGRIAQGTKVLTEGGYENVFRRTFETIPGEKLQKAYACYLSTSAGPVIGTLYLSTVKLAFCSDSPLASYPYPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFWFMGFVTYDKALKNLQEALRHQSFQVSIT
A9NXA4_______________MNKNQGSWSYGQPPTQSEGGGTMGTWVMGIPADPSSHPVNQQAATWVAGKAMPSNTTTTTQHYAQHSGPPPAVTGTITYHQNMPSPSNPYVATTPATGSTGKRPMDMIADVFNKCSKKLEENTRKVEGFAGNVWQHLKIGPSFTDTAMGRIAQGTKLLTEGGYENVFRRTFETIPGEKLQKAHACYLSTSAGPVIGTLYLSTVKLAFCSDSPLAYYPHPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFWFMGFVTYDKALKNLQEASRHQSTQIPIT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1008	93	6			0.999153
1011		6	93		0.999264
1012	93		6		0.999264
1016	6			93	0.999264
1022			6	93	0.999153
1029		5		94	0.998894
1077	6	93			0.999153
1080		93	6		0.999153
1132	89		3		0.998606
1390	94		5		0.997984
1464	8		91		0.999766
1601	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain