SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16098

Length: 1994 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16098
ATGGGAAGCTATGAAGCTGAAGCTGAAGCTGACGAGGGTTTGAACCGATAAGGAACAAAGACTTCTTTCATTGAGCCATCTGAAAAGGTGGGTTGAAGGAAGCGATCAAACCGAAGCCGAAGATGACGAGGGTTTGAACCGAGAAACAAAAAACACGTCTCCAACAGAGCCATCGCAAAAGATCCGTGCGTCTGTGAAGGCTTAGATTGTTTTCCTCCATGGGTTTTGACGATGATCATTATGATGAAGAGGGAGAGCCAATTATGGACCCAGACATGCAATCAGACAGGGAGCTGTCTCCAGAGCCAGCAGATGAGGATTGGCATCAGGAGCGGTCTCCTTCTCCTGTATTGGATTCGGCAGAAGAAGATGCTCCCAAAGCTAAGCCAAGAAAAAGGCTTATAAAAAAGACTGCACATGAGAGCTCTCCAGATGAGCAGGAACAGTCTAATAAGAGGAAAAGTAAGGATAAGGATGGGCAGCCTCGGAAAAAAAGGAAATCTAAGGACGATGGTGATGGAAGAGAAAAGAAGTCGAAATCCAAGTCGGGATCCAAGGTTGGAAGGATTTCAAAATCAGGTGGAAGGGGTGAAAGTTCTCGGAGCAATAGAGGTGAGACGGAAATGAAAGAAATGTGGGACTCAATTGCAGGGGTCGATTCAGAGGATGACCATGAGGGTCAGAGGACGAGGGAGGATGAAGCTTTTATCGATGATGCTGGGGTTGACCCACATGACCGGTATGCCAGTGATGATGAAGCAGGTTCTGTTGGTGATGCTCCTCAGGCAGAAGAGGGAGAGGAAGATGATGAAGTTAACAACCTTTTCAAGTCTGCAAAGAAGAAAAATAAGAAAGTTGAGCGTACTGCTGAGGAAACTGGATTGCTTGTAGAGAAGTTTATGGCTAAGCTTGAAGTTGCAGCTGAGGAAGATGCTGAATTGAATCGACAGTCTAAACCTGCTGTAAATAAGCTTAAAATGCTAAATGATATTACGGAAGTTCTTTCCAAGAGGCAACTGCAGCAAGAATTCTTAGACCGTGGAGTGCTCTCAGTTTTAAAGAATTGGCTTGAGCCTCTGCCAGATAAATGTCTGCCTAATACAAATGTTCGTACTACAGTTTTGAAGATTTTAACAGACTTACCGATTGACGTTGAACAGTATGATAGGAGAGAACAGCTTAAAAAGAGTGGATTAGGAAAGGTTATCATGTTCTTGTCAAAATCTGATGAAGAGACACCATCAAATAAAAAACTTGCAAGAGATCTTGTTGACAAATGGAGCCGGCCTATTTTCCAAAAGAGCACTAGATTTGAAGATATGAGAAATTTTGACGAAGAGAGAACTCCTTATAGAAGGCCACAACCAAAGAAATCTGTTGCAAAACCTGTTGGCTTGGATTCAAGAGATGATGACCTTGACTTGGATCAACTTCCTCAGGAACCAAAGCCTGCTCAGTCAGCTTTTAGACAGCTTACTGTTCGGCCTGAAGCAATTGCAATGGATTTTGTGGTTCGCCCTCAATCAAAGATTGACCCAGAAGAAATTAGAGCTCGTGCCAAGCAACTGAAGCAAGATGAGAGGCGGATGAAGATGAATAAGAAGTTGCAGCAACTGAAAGCTCCCAAGAAAAAGAAGCTTCAAGCAACAAAGATCAGTGTTGAAGGGCGTGGTCTGGTGAAATATTTTTAGCTTATAGATGACAAATTTACACTGGGAAAAATTTGTTCAATGTGGCGAGACTGGTTATCTAATCAAAATTAAACCTAACATTTATTGACTCTGAATAAAATGCTGTAAAGTTTTCAATTTCTTGTGAAAAATTTCAAACTTATTTTATGTACAAGATGGCCAAAATTTTGTTGGCACCATATTGGAAATGGGGAATCCTATCATGTTTGCATCCAATTCTGGTATGCAGTGTAAGGTTCCATGAAACGATGCATTGTTTAGGAGAATATTTTGTTTGGTACACCCTTTACCGTTGTTTGCTTC

Ace file of the UniGene sp_v1.1_unigene16098

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor IWS1, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	transcription factor	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor IIS, N-terminal	IPR017923	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMW1

Fln msg: your sequence is longer than subject: 491 - 237

Fln protein: MGFDDDHYDEEGEPIMDPDMQSDRELSPEPADEDWHQERSPSPVLDSAEEDAPKAKPRKRLIKKTAHESSPDEQEQSNKRKSKDKDGQPRKKRKSKDDGDGREKKSKSKSGSKVGRISKSGGRGESSRSNRGETEMKEMWDSIAGVDSEDDHEGQRTREDEAFIDDAGVDPHDRYASDDEAGSVGDAPQAEEGEEDDEVNNLFKSAKKKNKKVERTAEETGLLVEKFMAKLEVAAEEDAELNRQSKPAVNKLKMLNDITEVLSKRQLQQEFLDRGVLSVLKNWLEPLPDKCLPNTNVRTTVLKILTDLPIDVEQYDRREQLKKSGLGKVIMFLSKSDEETPSNKKLARDLVDKWSRPIFQKSTRFEDMRNFDEERTPYRRPQPKKSVAKPVGLDSRDDDLDLDQLPQEPKPAQSAFRQLTVRPEAIAMDFVVRPQSKIDPEEIRARAKQLKQDERRMKMNKKLQQLKAPKKKKLQATKISVEGRGLVKYF*

Protein Length: 492

Fln nts: ATGGGAAGCTATGAAGCTGAAGCTGAAGCTGACGAGGGTTTGAACCGATAAGGAACAAAGACTTCTTTCATTGAGCCATCTGAAAAGGTGGGTTGAAGGAAGCGATCAAACCGAAGCCGAAGATGACGAGGGTTTGAACCGAGAAACAAAAAACACGTCTCCAACAGAGCCATCGCAAAAGATCCGTGCGTCTGTGAAGGCTTAGATTGTTTTCCTCC_-_ATGGGTTTTGACGATGATCATTATGATGAAGAGGGAGAGCCAATTATGGACCCAGACATGCAATCAGACAGGGAGCTGTCTCCAGAGCCAGCAGATGAGGATTGGCATCAGGAGCGGTCTCCTTCTCCTGTATTGGATTCGGCAGAAGAAGATGCTCCCAAAGCTAAGCCAAGAAAAAGGCTTATAAAAAAGACTGCACATGAGAGCTCTCCAGATGAGCAGGAACAGTCTAATAAGAGGAAAAGTAAGGATAAGGATGGGCAGCCTCGGAAAAAAAGGAAATCTAAGGACGATGGTGATGGAAGAGAAAAGAAGTCGAAATCCAAGTCGGGATCCAAGGTTGGAAGGATTTCAAAATCAGGTGGAAGGGGTGAAAGTTCTCGGAGCAATAGAGGTGAGACGGAAATGAAAGAAATGTGGGACTCAATTGCAGGGGTCGATTCAGAGGATGACCATGAGGGTCAGAGGACGAGGGAGGATGAAGCTTTTATCGATGATGCTGGGGTTGACCCACATGACCGGTATGCCAGTGATGATGAAGCAGGTTCTGTTGGTGATGCTCCTCAGGCAGAAGAGGGAGAGGAAGATGATGAAGTTAACAACCTTTTCAAGTCTGCAAAGAAGAAAAATAAGAAAGTTGAGCGTACTGCTGAGGAAACTGGATTGCTTGTAGAGAAGTTTATGGCTAAGCTTGAAGTTGCAGCTGAGGAAGATGCTGAATTGAATCGACAGTCTAAACCTGCTGTAAATAAGCTTAAAATGCTAAATGATATTACGGAAGTTCTTTCCAAGAGGCAACTGCAGCAAGAATTCTTAGACCGTGGAGTGCTCTCAGTTTTAAAGAATTGGCTTGAGCCTCTGCCAGATAAATGTCTGCCTAATACAAATGTTCGTACTACAGTTTTGAAGATTTTAACAGACTTACCGATTGACGTTGAACAGTATGATAGGAGAGAACAGCTTAAAAAGAGTGGATTAGGAAAGGTTATCATGTTCTTGTCAAAATCTGATGAAGAGACACCATCAAATAAAAAACTTGCAAGAGATCTTGTTGACAAATGGAGCCGGCCTATTTTCCAAAAGAGCACTAGATTTGAAGATATGAGAAATTTTGACGAAGAGAGAACTCCTTATAGAAGGCCACAACCAAAGAAATCTGTTGCAAAACCTGTTGGCTTGGATTCAAGAGATGATGACCTTGACTTGGATCAACTTCCTCAGGAACCAAAGCCTGCTCAGTCAGCTTTTAGACAGCTTACTGTTCGGCCTGAAGCAATTGCAATGGATTTTGTGGTTCGCCCTCAATCAAAGATTGACCCAGAAGAAATTAGAGCTCGTGCCAAGCAACTGAAGCAAGATGAGAGGCGGATGAAGATGAATAAGAAGTTGCAGCAACTGAAAGCTCCCAAGAAAAAGAAGCTTCAAGCAACAAAGATCAGTGTTGAAGGGCGTGGTCTGGTGAAATATTTTTAG___CTTATAGATGACAAATTTACACTGGGAAAAATTTGTTCAATGTGGCGAGACTGGTTATCTAATCAAAATTAAACCTAACATTTATTGACTCTGAATAAAATGCTGTAAAGTTTTCAATTTCTTGTGAAAAATTTCAAACTTATTTTATGTACAAGATGGCCAAAATTTTGTTGGCACCATATTGGAAATGGGGAATCCTATCATGTTTGCATCCAATTCTGGTATGCAGTGTAAGGTTCCATGAAACGATGCATTGTTTAGGAGAATATTTTGTTTGGTACACCCTTTACCGTTGTTTGCTTC

Fln Alignment:

sp_v1.1_unigene16098___MLNDITEVLSKRQLQQEFLDRGVLSVLKNWLEPLPDKCLPNTNVRTTVLKILTDLPIDVEQYDRREQLKKSGLGKVIMFLSKSDEETPSNKKLARDLVDKWSRPIFQKSTRFEDMRNFDEERTPYRRPQPKKSVAKPVGXXXXXXXXXXXXXPQEPKPAQSAFRQLTVRPEAIAMDFVVRPQSKIDPEEIRARAKQLKQDERRMKMNXXXXXXXXXXXXXXXXXXISVEGRGLVKYF
B8LMW1_______________MLPVLTAVLSKRQLQQEFLDRGVLSVLKNWLEPLPDKCLPNTNVRTAVLKILTDLPIDVEQYDRREQLKKSGLGKVIMFLSKSDEETTSNKKLARDLVDKWSRPIFQKSTRFEDMRNFDEERTPYRRPPPKKPVAKPVGLDSRDDDLDLDQLPQEPKPAQPGFRQLTVRPEAIAMDFVVRPQSKIDPDEVRARAKQLKQDERRMKMNKKLQQLKAPKKKKLQATKISVEGRGMVKYF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1853	72		27		1.0
1912	10			90	0.90298
1913	10			90	0.90298
1914	10	90			0.90298
1915	10			90	0.90298
1916	10		90		0.90298
1917		10	90		0.90298
1918	10			90	0.90298
1920	10			90	0.90298
1921	10		90		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
12	32	TGAAGC TGAAGC TGAAGC TGA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain