SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16097

Length: 1790 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16097

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pseudotzain n=3 Tax=Pinaceae RepID=Q40922_PSEMZ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cysteine proteinase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC2

Fln msg:

Fln protein: MGILLLFALLALFAIAGSASRADFSIIGYDSKDLREDDAISELYELWLAQHRKAYNGLDEKQKRFSVFKDNFLYIHQHNNQENPSFKLGLNQFADLSHEEFKATYLGAKLDTKKRLSKSPSPRYQYSEGENLPESVDWREKGAVAAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIIDNGGLDSEDDYPYTANAGSCDAYRKNAHVVTIDSYEDVPENDEKSLKKAAAHQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGKDYWIVKNSWGKSWGEKGFIRLQRNIEGASTGMCGIAMEASYPVKKGSNPPNPGPSPPSPVKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPSDHPVCDLDAQTCLKSRKDPFGTKMLKRTPAKPYWALSGQKAVTERS*

Protein Length: 464

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCTCCCACTTTACGTCGTGACCTTGGCTGTCACTCAGGTGATCTGGGCAGACAGGAACGCCCATCCTTTTCATTTTGAGGGTGACTGCTTTGCTTGGTCCATCCATGTGGCTTTGAATCTTTTGAGAGACTGGTTTGGTTTTCAGCGAGGGTTACGCCCAGACCGGTGGAGAGAAATTCCCTATTCGTGCCCAAATCAGTCAAAAACTAAGATTGTATCAGT_-_ATGGGAATCCTTCTGCTGTTTGCTCTGCTGGCATTGTTTGCCATCGCAGGCAGCGCTTCCAGAGCAGATTTTTCCATCATCGGGTATGATAGCAAAGACCTGAGGGAAGATGATGCGATCTCGGAGCTCTATGAACTGTGGCTCGCTCAGCACAGGAAAGCCTATAATGGCCTTGACGAGAAACAGAAGAGGTTCTCTGTATTTAAAGACAATTTTCTGTATATTCATCAGCACAACAACCAAGAGAATCCATCCTTCAAACTGGGGCTGAACCAGTTTGCAGATCTAAGTCACGAGGAATTCAAGGCCACATATTTGGGTGCCAAGCTGGATACCAAGAAACGCTTGTCCAAGTCTCCCAGCCCTCGATACCAGTATTCGGAGGGCGAGAATTTGCCAGAGTCCGTTGACTGGAGAGAAAAGGGAGCCGTGGCTGCTGTTAAGGACCAGGGCTCCTGCGGAAGTTGTTGGGCGTTCTCGACTGTGGCTGCTGTTGAAGGCATCAATCAAATTGTGACTGGCAATTTGACTTCCCTGTCCGAGCAGGAACTGGTGGACTGCGATACTTCTTACAACCAAGGATGCAATGGCGGTCTCATGGATTATGCTTTCCAGTTTATCATAGACAACGGTGGGCTTGACAGTGAGGATGATTACCCTTACACGGCCAACGCTGGCAGCTGTGACGCTTACCGAAAAAATGCCCATGTGGTGACAATTGATAGCTACGAAGATGTGCCTGAGAACGATGAGAAGTCGCTGAAGAAGGCTGCGGCGCATCAGCCGATTAGCGTTGCCATCGAAGCCAGCGGAAGGGCGTTCCAGTTTTACGAATCTGGCGTATTCACAAGCACCTGCGGAACTCAGCTGGACCACGGTGTCACTCTGGTAGGGTATGGTTCAGAGTCCGGCAAAGATTATTGGATTGTGAAGAATTCTTGGGGAAAGAGCTGGGGAGAGAAGGGTTTCATCAGACTGCAGAGGAACATTGAAGGGGCTTCGACGGGAATGTGCGGTATAGCGATGGAGGCATCGTACCCTGTAAAGAAGGGTTCCAACCCTCCAAACCCTGGGCCTTCTCCCCCATCCCCTGTGAAGCCTCCTACCGTGTGTGATAACTACTATTCCTGCCCGGAGAGCAACACCTGCTGTTGCATGTATGACTTTGGGGGTTACTGCTATGCATGGGGTTGCTGCCCTCTCAACTCTGCCACATGCTGCGACGATCACTACAGTTGCTGCCCTAGCGATCATCCGGTTTGCGATCTCGATGCACAGACATGCCTCAAGAGTCGCAAGGATCCATTTGGAACGAAGATGCTGAAGCGTACCCCGGCCAAACCTTACTGGGCTCTCTCTGGTCAGAAAGCGGTCACTGAAAGGAGCTGA___TTTCTCCCTTCAATCCCAGCCCTCTAAACTCAACAACAGGCTGGTCCGAATGGGGGAAGAAATTAAATTTTAATGCATGAAAAAATTTCAAACATATTTATCGATAAATATTCCTGCACATATGGCTTCTCCAAATCGGCCAAGACACTTCCCA

Fln Alignment:

sp_v1.1_unigene16097___RADFSIIGYDSKDLREDDAISELYELWLAQHRKAYNGLDEKQKRFSVFKDNFLYIHQHNNQENPSFKLGLNQFADLSHEEFKATYLGAKLDTKKRLSKSPSPRYQYSEGENLPESVDWREKGAVAAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIIDNGGLDSEDDYPYTANAGSCDAYRKNAHVVTIDSYEDVPENDEKSLKKAAAHQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGKDYWIVKNSWGKSWGEKGFIRLQRNIEGASTGMCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPSDHPVCDLDAQTCLKSRKDPFGTKMLKRTPAKPYWALSGQKAVTERS
A9NUC2_______________RADFSIIGYDSKDLREDDAIMELYELWLAQHKKAYNGLGEKQNRFSVFKDNFLYIHQHNNQGNPSYKLGLNQFADLSHEEFKATYLGAKLDTKKRLSNSPSPRYQYSDGEDLPESIDWREKGAVTAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIINNGGLDSEDDYPYKANDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGTDYWIVKNSWGKSWGEKGFIRLQRNIEGVSTGMCGIAMEASYPLKKGANPPNPGPSPPSPVKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPNDHPVCDLDAQTCLKSRKDPIGTKMLKRTPAKPYWALSGQEAVTERT

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
322		85		14	0.993533
514		11	88		0.999952
715	12			87	0.992554
857		25		75	0.996473
895	75		25		0.996473
945	83	16			0.994512
946	83		16		0.994512
947	83			16	0.994512
948	83	16			0.994512
951	16	83			0.994512
954	83			16	0.994512
959		16	83		0.994512
962	83			16	0.994512
965	83	16			0.994512
967		16		83	0.994512
1052	20		80		0.995493
1107	25		75		0.996473
1389	95		4		0.997218
1432	95		4		0.996252
1532		97	2		0.936149
1593	97		2		0.946738

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain