SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16080

Length: 1800 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16080

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoribulokinase n=5 Tax=Picea sitchensis RepID=A9NVC2_PICSI	-	-	94%
FL-Next	sp=Phosphoribulokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribulokinase.	EC:2.7.1.19	-	0.0	93%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Carbon fixation in photosynthetic organisms	00710		0.0	93%
Blast2go	Metabolic pathways	01100		0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	93%
Blast2go	reductive pentose-phosphate cycle	GO:0019253	Biological Process	93%
Blast2go	phosphoribulokinase activity	GO:0008974	Molecular Function	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC2

Fln msg:

Fln protein: MACPAPTAASTPATVRSWNSRFCSNSPLASFSLAHTTRRPRRALVVCTVGPEKTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEKAVTALDPRANNFDLMYEQVKAMKEGKAVMKPIYNHVTGLLDPPEQINPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIQVLPTELIPDDNEGKVLRVRMVMKEGVSFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPDVYYDNEVSVLEMDGQFDRLEELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDVYEQIIAKRAGASLEAAKA*

Protein Length: 402

Fln nts: AATGGGGCAACGAAAGGAGGGGAGAGGAGAAGGAAGGATCAAGGAAAAAAAAAAGAGAGCCACATTGCCACTATGCATTGTATTCAGTAATTGCAATATTGCTTGTGGGTGTTGAAATCTTCAACTGGGAGTTGAAGAGATTAAGCGACCGGGGGCTACAGA_-_ATGGCCTGCCCAGCTCCAACAGCAGCATCAACTCCTGCAACTGTGAGATCATGGAACTCACGGTTCTGTTCTAATTCCCCTCTCGCTTCATTTTCTCTGGCTCACACAACCAGGAGACCCAGGAGAGCGCTGGTCGTATGCACTGTTGGGCCCGAGAAGACCGTGGTCATAGGCCTGGCTGCCGACTCAGGCTGTGGGAAGAGTACGTTCATGAGGCGCCTAACAAGCGTCTTTGGCGGAGCCGCAGAGCCCCCTAAGGGTGGAAATCCTGACTCCAATACGCTTATCAGCGATACCACCACGGTCATATGCTTGGACGACTACCACTCCCTGGACAGATATGGAAGGAAGGAGAAAGCTGTGACGGCTCTTGACCCCAGGGCTAATAACTTTGATCTCATGTATGAGCAGGTCAAGGCCATGAAGGAGGGGAAAGCAGTCATGAAGCCCATCTATAACCATGTCACTGGTCTTCTAGATCCTCCGGAGCAGATCAATCCTCCCAAGATTCTCGTCATCGAAGGCCTTCATCCCATGTATGATGCCCGTGTGAGAGAACTACTGGATTTCAGTATCTATTTGGACATCAGCAACGAGGTCAAGTTCGCTTGGAAAATCCAGCGTGATATGGCCGAACGTGGGCACAGCCTAGAAAGTATCAAAGCAAGTATCGAAGCCCGCAAACCAGATTTTGATGCCTATATCGATCCACAGAAACAATACGCAGACGTTGTGATTCAGGTTTTACCTACAGAGCTGATTCCCGATGATAATGAAGGGAAGGTACTGCGTGTTCGCATGGTGATGAAGGAGGGAGTGAGCTTCTTCAATCCCGTCTATCTGTTCGACGAGGGCTCCACAATATCGTGGATTCCATGTGGTAGAAAGTTAACTTGTTCATATCCAGGCATCAAATTCTTCTATGGCCCTGACGTTTACTATGACAACGAGGTGTCTGTGCTGGAGATGGATGGACAGTTTGACAGATTAGAAGAGTTAATCTACGTGGAAAGCCACTTGAGTAACATATCTACCAAGTTCTATGGTGAAGTAACACAACAGATGCTGAAGCATGCAGATTTTCCAGGGAGCAACAATGGCACTGGTCTGTTCCAGACCATTGTTGGACTTAAAATCAGGGATGTTTATGAGCAGATCATCGCAAAGAGGGCCGGGGCTTCCTTGGAAGCAGCTAAGGCCTAG___ACCAGAGAAGATGATGAGATATTCACTAGCATTATGTTCGGCATGTAACATTAAATTAATTAAACGCCATAACTCTTTTCTCTGGTTGCTTCTCTATATATATTATCAGTAAATCAGTCGATTCTGTTGTAAGTCACTCAGTCCTCGGATGTAATATAAATATAAAACCATGAAAATTATTCATCTCAGAGAAGTTAAATGTTAGCTCAAAGAAGAGAATTTTTCAATCCTCTTAATTGGCAACCTTTTGGTGGCTGATTTCATATGGGGCCGGACTGCCAATTTTTCAATCCTCTTCCTTGTCAAATTGGCAACCTTTTGGTGGCTGATTTCATATGGGGCCGGACTGCCTACTTTATTCTGTTACTCGATATCACATCTCCTAAATATAGAAAATGCCTATGCCATACACTGGTCAATTTTATCGATGGTAAC

Fln Alignment:

sp_v1.1_unigene16080___VRSWNSRFCSNSPLASFSLAHTTRRPRRALVVCTVGPEKTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEKAVTALDPRANNFDLMYEQVKAMKEGKAVMKPIYNHVTGLLDPPEQINPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIQVLPTELIPDDNEGKVLRVRMVMKEGVSFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPDVYYDNEVSVLEMDGQFDRLEELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDVYEQIIAKRAGASLEAAKA
A9NVC2_______________VRSWNSQFCSNSPLASFSLAHTTRRPRRALVVCSVGPEKTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKDKGVTALDPRANNFDLMYEQVKALKEGKSVMKPIYNHVTGILDPAEQINPPKILVIEGLHPMFDARVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIQARKPDFDAFIDPQKQYADVVIQVLPTELIPEENEGKVLRVRMVMKEGVNFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPDIYYDNEVSVLEMDGQFDRLEELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDVYEQLISQTTGASLEAAKA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
837	80	20		0.995493
1551	11		88	1.0
1796	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain