SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16074

Length: 1454 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16074 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ	-	-	4.0e-18	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	hat family dimerisation domain containing protein	-	-	2.4161e-25	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HAT dimerisation	IPR008906	-	2.4161e-25	57%
Blast2go	Ribonuclease H-like domain	IPR012337	-	2.4161e-25	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 63 aas, putative chimeric sequence, your sequence is shorter than subject: 218 - 478

Fln protein: SRRKPHQDQEVHKKYMAALSKLIPDEEEAALVRRQMSNYTLNTGPFGSMHAIKDRETFSALEWWNMHGGGTPLLQSLALRVLSQVVNTSSAERCWSSYSFIHSVKRNRLSLDQAESLVYVHYNLRLLSHYCEDAKSNKDLKIWDKNPEEPNLEDGVLRFDLLAAAVLLVPRFHGSTPTAGGSSSSVSVPRLSQAPSSSLPPRGGPPPRSIHGGRRRD*

Protein Length: 219

Fln nts: AAGCAGGAGAAAACCACACCAAGATCAAGAGGTTCACAAAAAATATATGGCTGCATTGAGTAAATTAATCCCTGATGAGGAGGAGGCTGCATTGGTACGGAGACAGATGAGCAACTATACGCTCAACACTGGTCCATTTGGGAGCATGCATGCAATTAAAGATCGAGAGACTTTTTCTGCTCTTGAGTGGTGGAACATGCATGGAGGGGGTACTCCACTTCTACAGAGTTTGGCATTGCGGGTGCTATCACAGGTGGTAAACACTTCTTCTGCAGAGAGGTGTTGGAGCTCTTATTCTTTCATCCACAGTGTTAAAAGGAACAGGTTGAGTTTAGACCAAGCAGAGAGCTTGGTTTATGTTCATTACAACTTGCGATTGTTGTCCCATTACTGTGAAGATGCAAAGTCTAATAAAGACTTGAAGATTTGGGACAAGAATCCAGAGGAGCCCAATTTGGAGGATGGTGTTTTGCGTTTTGATCTGTTAGCGGCTGCTGTTCTCTTGGTTCCTAGGTTCCATGGTTCAACACCAACAGCAGGGGGTTCTTCTTCATCAGTTTCAGTGCCACGACTTTCACAGGCACCATCTTCTTCATTGCCACCACGTGGAGGCCCGCCACCACGTTCTATTCATGGTGGAAGGAGGAGAGATTAG___TAGATATATTCACAATCTACTACTTTTTGTCATAGATTACTCATTAGACTTGTGAATTTGAATTTTGAACCTTTTTGGCTTGGTGGTGACCAAGTGACATATTTTGTAAACATTATTATTTGAATTTTGGACATGACAAATGTTGACAGTTGCTCACTTGCTAGATAAATCATAATATGCTCTATGTTTTATGTTTTATAATATGCTTAAATGTTTTATGTTTTATGTGTTATAATATGCTTAAAAAATTGATGTATGTTTGTAATAGCTAGAATATAGATGATTGTTGTACATACTAGTAACTACAAGGGAATCATGGGTGCCATATCTATCTTGATTTAAGCAAAAATATGCATGTTTTCATGTCTTCTACAATTAATTTGGTATTTGGGATGTTTTTTTTTAGTATAAATGCAAAAAAATATAAAATATATATATATATAGCAGACGCTTCCGCGGACGCTTCGCTTCCTAGATTTTTGGAAAATGACGCTACGGCCGCTTCGCTTCCGAAACTCGCTTCCGCTTCGCCTCCCGCTTCGTGCAACATTGATCCCACATCTCTTTGCTAGTATCCTTGCCAGCTATGTGTGAGACTATAAGGTCCCAGACTCCATCTAGGTTCAACCACTTAGCCCATGCCATCTCCTTCCTATATTCCTTCAGTTGATCCACATCCTGGGGAACTGCCACAACGTTGTCTATGTTGAGCTTCAGGCCATACTCATCCACCAAGGACATCATGGCCTTCCAGATGACATAGTTGGAGGAGCCCTCCAACCTATCCTGATCTCTCAAC

Fln Alignment:

sp_v1.1_unigene16074___WWNMHGGGTPLLQSLALRVLSQVVNTSSAERCWSSYSFIHSVKRNRLSLDQAESLVYVHYNLRL
D5A8W4_______________WWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1175	83		16		0.994512
1190		83		16	0.994512
1191	16			83	0.994512
1192	16		83		0.994512
1193		83		16	0.994512
1226	20		80		0.995493
1239	50	50			1.0
1244	25		75		0.996473
1299		66		33	0.997452
1311	66	33			0.997452
1313		33		66	0.997452
1361	33	33		33	0.997753
1362	33	66			0.997452
1364	33		66		0.997452
1369		66	33		0.997452
1370	33		66		0.997452
1373		66		33	0.997452
1386		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
357	371	TA TA TA TA TA TA TA T	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain