SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16072

Length: 2058 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16072
GCAGCTTGGGCTGGAATGGGAAANNTNNTNACNTGGGACCTAGACTCACACCCAATTCTATTCATTCAATTAAAATCCGTCCAAGTCGCAAACCAGCAATGGCGCAAAACAGAGGATGCCTTGTTTGCTGCCCTGTCATATCACGTTCAGTGGAAGAGACACTGGAGCAAATGCAACAAGCCAAAGTTGATGGTGCAGACATCGTTGAGATCAGGATTGACCTCTTAAATAATTTCAATCCAAAGGCTGATTTAGCAATTCTGCTCAAAGAAAGACCACTGCCCATCATCATTACTTACAGGCCAAAGTGGGAGGGAGGTGAGTATGAAGGTGATGAAGCAACACGTCTTGATGTACTTCGTTTGGCTATAGAATTGGATGCCGACTATGTTGATGTGGAGCTCCAGGTGGCAACCGATTTCATAAAAAGCATGCGTGACAAGAAATCAAGAATGTGCAAGATCATTGTTTCGAATCATAATTTTGAAAGTACTCCATCAGTTGAGGAACTTTGTCATCTTGTTGAAAGTTTACAATCTACAGGAGCTGACATTGTGAAATTTACGACAACTGCCACTACTATTACTGACGTTGCCCGGGTTTTTCAAGTGTTTGCTTACTCTCAAGTTCCCATTATTGCATCGGTGATTTCTTCCAGAGGGCTAATTAGCTCGATTCTTTGCCCAAAGTTTGGTGGATATCTTACGTTTGGCTCCTTGGGAACAGGGAAGGAATCAGCTTCGGGTCAACCAGCATTGACGGATCTAATAAACATATACAGGATAAAGAACTTGGGTAAAGATACCAAGGTTTTTGGAATCATAGGAAATCCAGTAGGTCACAGCAAAGGACCAATTCTGCACAATCGGGCATTCAGAGAGATAGGACTTGATGCAGTCTATGTACCTTTTCTTGTTGATGATCTTGCAGAGTTTCTAAGGGTCTATTCCTCCCCTGATTTTTCTGGTTTCAGTGTTACAATACCTCACAAGGAGGCTGCTGTTCAATGTTGCGACGAAGTGGAACCAATTGCTCAGTCTATTGGAGCAGTAAATACAATAGTGAGGAGGCCAAGTGATGGAAAACTTATTGGGTATAACACAGACTATACAGGTGCCATTTCTGCAATTGAGGATGGACTAAAAGGTAGACTTAGGAGTGGAGACTGGGGAAATACTTCCCCTCTTTCTGGAAGACTCTTCGTGGTTGTTGGAGCTGGAGGAGCTGGTAAAGCCCTTGCATATGGGGCAAAAGAAAAGGGAGCGAGGGTTGTGATTGCTAATCGTAATTATGAAAGGGCAAAGGCACTGGCGAATTTAGTTGGAGGGGAAGCTATCCCTCTAGACAAGTTGGACAGCTTTTGTCAAGAGAATGGAATGATTCTTGCAAACACTACTTCTGTTGGAATGCATCCAAATGTGATGGAGACACCTATATCAAAGGAGGCTTTAGGGGCATACGATCTTGTTTTTGATGCTGTTTACACACCAAAAGTTACTAGACTCTTACGAGAAGCAGAAGAGGCGGGACCTACGCTGGCACTAAGCGGGTTGGAAATGTTTATAAGGCAGGCCATGGGTCAATTTGAACTCTTTACTGGTACTCCAGCACCTGGGGTATTAATGCGGGAAATCGTTGCCAGACTGTAAGACATGCTTGGGCAGCTTTTGGAGATATATGTAGCTGCGATTATTTGGAGCTTGTTGGTGCTACATTGTGCTTCAGTTCTGAAAGGTTCTTTGGAATGACATTGTCTTTTGGAAAAAAAATTCTGTGCTCTATTGACATTTGTAGGTCATAATTCTTCTAGATAAAATTATTTGTTCTCGTGATAAATTATGGGAGACATATGAAGTGCATAGTTGAAGCAGAAGTGGATCATATGTGAAAGTTATCTATGCTTTTGGAATCCTTTTAGCTAGTAGTGTTATAAAAGTGTTTTTTCACTTTACAAATAAAGTCTCTTAGGCATCTTGACAACACTCTCAAGATACAAATACTAGAGCTGTGAGATAATCTTTAATATTTTAGTTGAATGAAACCGCAAGGTGATGCAAA

Ace file of the UniGene sp_v1.1_unigene16072

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Shikimate dehydrogenase n=3 Tax=Andropogoneae RepID=B6TSW1_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	dehydroquinate dehydratase shikimate dehydrogenase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Shikimate dehydrogenase.	EC:1.1.1.25	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		77%
Blast2go	Biosynthesis of phenylpropanoids	01061		77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		77%
Blast2go	Biosynthesis of plant hormones	01070		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Biosynthesis of secondary metabolites	01110		77%
Blast2go		EC:4.2.1.1-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	shikimate 3-dehydrogenase (NADP+) activity	GO:0004764	Molecular Function	77%
Blast2go	NADP binding	GO:0050661	Molecular Function	77%
Blast2go	3-dehydroquinate dehydratase activity	GO:0003855	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLR2

Fln msg:

Fln protein: MAQNRGCLVCCPVISRSVEETLEQMQQAKVDGADIVEIRIDLLNNFNPKADLAILLKERPLPIIITYRPKWEGGEYEGDEATRLDVLRLAIELDADYVDVELQVATDFIKSMRDKKSRMCKIIVSNHNFESTPSVEELCHLVESLQSTGADIVKFTTTATTITDVARVFQVFAYSQVPIIASVISSRGLISSILCPKFGGYLTFGSLGTGKESASGQPALTDLINIYRIKNLGKDTKVFGIIGNPVGHSKGPILHNRAFREIGLDAVYVPFLVDDLAEFLRVYSSPDFSGFSVTIPHKEAAVQCCDEVEPIAQSIGAVNTIVRRPSDGKLIGYNTDYTGAISAIEDGLKGRLRSGDWGNTSPLSGRLFVVVGAGGAGKALAYGAKEKGARVVIANRNYERAKALANLVGGEAIPLDKLDSFCQENGMILANTTSVGMHPNVMETPISKEALGAYDLVFDAVYTPKVTRLLREAEEAGPTLALSGLEMFIRQAMGQFELFTGTPAPGVLMREIVARL*

Protein Length: 518

Fln nts: GCAGCTTGGGCTGGAATGGGAAAacTtgTaACcTGGGACCTAGACTCACACCCAATTCTATTCATTCAATTAAAATCCGTCCAAGTCGCAAACCAGCA_-_ATGGCGCAAAACAGAGGATGCCTTGTTTGCTGCCCTGTCATATCACGTTCAGTGGAAGAGACACTGGAGCAAATGCAACAAGCCAAAGTTGATGGTGCAGACATCGTTGAGATCAGGATTGACCTCTTAAATAATTTCAATCCAAAGGCTGATTTAGCAATTCTGCTCAAAGAAAGACCACTGCCCATCATCATTACTTACAGGCCAAAGTGGGAGGGAGGTGAGTATGAAGGTGATGAAGCAACACGTCTTGATGTACTTCGTTTGGCTATAGAATTGGATGCCGACTATGTTGATGTGGAGCTCCAGGTGGCAACCGATTTCATAAAAAGCATGCGTGACAAGAAATCAAGAATGTGCAAGATCATTGTTTCGAATCATAATTTTGAAAGTACTCCATCAGTTGAGGAACTTTGTCATCTTGTTGAAAGTTTACAATCTACAGGAGCTGACATTGTGAAATTTACGACAACTGCCACTACTATTACTGACGTTGCCCGGGTTTTTCAAGTGTTTGCTTACTCTCAAGTTCCCATTATTGCATCGGTGATTTCTTCCAGAGGGCTAATTAGCTCGATTCTTTGCCCAAAGTTTGGTGGATATCTTACGTTTGGCTCCTTGGGAACAGGGAAGGAATCAGCTTCGGGTCAACCAGCATTGACGGATCTAATAAACATATACAGGATAAAGAACTTGGGTAAAGATACCAAGGTTTTTGGAATCATAGGAAATCCAGTAGGTCACAGCAAAGGACCAATTCTGCACAATCGGGCATTCAGAGAGATAGGACTTGATGCAGTCTATGTACCTTTTCTTGTTGATGATCTTGCAGAGTTTCTAAGGGTCTATTCCTCCCCTGATTTTTCTGGTTTCAGTGTTACAATACCTCACAAGGAGGCTGCTGTTCAATGTTGCGACGAAGTGGAACCAATTGCTCAGTCTATTGGAGCAGTAAATACAATAGTGAGGAGGCCAAGTGATGGAAAACTTATTGGGTATAACACAGACTATACAGGTGCCATTTCTGCAATTGAGGATGGACTAAAAGGTAGACTTAGGAGTGGAGACTGGGGAAATACTTCCCCTCTTTCTGGAAGACTCTTCGTGGTTGTTGGAGCTGGAGGAGCTGGTAAAGCCCTTGCATATGGGGCAAAAGAAAAGGGAGCGAGGGTTGTGATTGCTAATCGTAATTATGAAAGGGCAAAGGCACTGGCGAATTTAGTTGGAGGGGAAGCTATCCCTCTAGACAAGTTGGACAGCTTTTGTCAAGAGAATGGAATGATTCTTGCAAACACTACTTCTGTTGGAATGCATCCAAATGTGATGGAGACACCTATATCAAAGGAGGCTTTAGGGGCATACGATCTTGTTTTTGATGCTGTTTACACACCAAAAGTTACTAGACTCTTACGAGAAGCAGAAGAGGCGGGACCTACGCTGGCACTAAGCGGGTTGGAAATGTTTATAAGGCAGGCCATGGGTCAATTTGAACTCTTTACTGGTACTCCAGCACCTGGGGTATTAATGCGGGAAATCGTTGCCAGACTGTAA___GACATGCTTGGGCAGCTTTTGGAGATATATGTAGCTGCGATTATTTGGAGCTTGTTGGTGCTACATTGTGCTTCAGTTCTGAAAGGTTCTTTGGAATGACATTGTCTTTTGGAAAAAAAATTCTGTGCTCTATTGACATTTGTAGGTCATAATTCTTCTAGATAAAATTATTTGTTCTCGTGATAAATTATGGGAGACATATGAAGTGCATAGTTGAAGCAGAAGTGGATCATATGTGAAAGTTATCTATGCTTTTGGAATCCTTTTAGCTAGTAGTGTTATAAAAGTGTTTTTTCACTTTACAAATAAAGTCTCTTAGGCATCTTGACAACACTCTCAAGATACAAATACTAGAGCTGTGAGATAATCTTTAATATTTTAGTTGAATGAAACCGCAAGGTGATGCAAA

Fln Alignment:

sp_v1.1_unigene16072___CLVCCPVISRSVEETLEQMQQAKVDGADIVEIRIDLLNNFNPKADLAILLKERPLPIIITYRPKWEGGEYEGDEATRLDVLRLAIELDADYVDVELQVATDFIKSMRDKKSRMCKIIVSNHNFESTPSVEELCHLVESLQSTGADIVKFXXXXXXXXDVARVFQVFAYSQVPIIASVISSRGLISSILCPKFGGYLTFGSLGTGKESASGQPALTDLINIYRIKNLGKDTKVFGIIGNPVGHSKGPILHNRAFREIGLDAVYVPFLVDDLAEFLRVYSSPDFSGFSVTIPHKEAAVQCCDEVEPIAQSIGAVNTIVRRPSDGKLIGYNTDYTGAISAIEDGLKGRLRSGDWGNTSPLSGRLFVVVXXXXXXXXXXXXXXXXXXRVVIANRNYERAKALANLVGGEAIPLDKLDSFCQENGMILANTTSVGMHPNVMETPISKEALGAYDLVFDAVYTPKVTRLLREAEEAGPTLALSGLEMFIRQAMGQFELFTGTPAPGVLMREIVAR
B8LLR2_______________CLLCIPLVGQSMEEMLSQMELARIHGADCVELRIDHVRNFNPRVDLDTLLKARTMPAIVTYRPKWEGGAYEGDEGKRLDVLRLAMELGADYIDVELQVASDFIKSISNKKRENSKIIVSNHNYQFTPSLEDLGLLVARIQSTGADIVKIATTATDITDVARIFRVLAYCQVPILALVMSERGLISRLLCPKFGGYLTFGSLEAGKESAPGQATLADMLNIYKIRGLGRDTKVFGLIGNPVSHSKGPTLHNRAFGEIGFDAIYVPFLVDDIKEFLKVYSSPDFAGFSVTIPHKEAALECCDEVDPIARSIGAVNTIVRRQSDGKLIGYNTDSVGAISAIEDALKGKHNYGDWTHSSPLAGKLFLIVGAGGAGKALAFGAKQKGARVVIANRNYERAKALAIQVEGEAIPLDKLDHFRPETGMILANTTSMGMHPNVSQTPISKEALSSYAVVFDAVYTPKWTRLLQDAEATG-ALVVCGLEMFIRQAMGQFELFTGCKAPEKLMREIVLK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
24		66		33	0.997452
25	33		66		0.997452
27	33	66			0.997452
28		33	66		0.997452
30		33	66		0.997452
33	33	66			0.997452
35			33	66	0.997452
36			33	33	0.997753
38	33	66			0.997452
39		33		66	0.997452
40		33	66		1.0
42	33			33	0.997753
43	33	33	33		0.997753
44	66		33		0.997452
45	33	66			0.997452
47		66	33		0.997452
48	66			33	0.997452
51		33		66	0.997452
52		66		33	0.997452
54	33	66			0.997452
233		25		75	0.996473
348		50		50	1.0
356		20		80	0.995493
559	20		80		0.995493
582	83	16			0.994512
620		66		33	1.0
679		25		75	0.996473
693		25		75	0.996473
1592		88		11	0.923564
1645		10		90	0.90298
1648	90		10		0.90298
1649	90			10	0.90298
1653	90	10			0.90298
1659	10		90		0.90298
1660		10	90		0.90298
1661			90	10	0.90298
1916			10	89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain