SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16064

Length: 415 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16064
CCGGAAAAAGCATTGGCAGCAGCAATGAAGGCATTGTAGGAGTAGAATCCCTTCATTGCTGCTGCCAATGCTTTTTCCGGCTTCGGCACCACAGGCGATCTCGCTACTCGGAAAGAGAGCTCGCTGCTTTCTTTGGCCAAACCTCCCACGAAACCACAGGGGGATGGCCGACAGCACCAGATGGCCCATACTCCTGGGGCTATTGCTTCAAAGAGGAGCAAGGCAATCCACCCGCCCAATACTGTCAAGCATCTTCCCAATGGCCCTGCGTGTCTGGAAAGAGATACTATGGACGAGGACCGGTTCAAATATCATGGAACTACAACTATGGACCGGCCGGCAAAGCAATCGGATTCGACGGCATCAACAACCCTGACATTGTTGCTAGCGATGCCACGGTCTCCTTTAAGACGGC

Ace file of the UniGene sp_v1.1_unigene16064

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chitinase 2 n=1 Tax=Triticum aestivum RepID=Q8W428_WHEAT	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	basic endochitinase-like protein	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	94%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	chitin catabolic process	GO:0006032	Biological Process	94%
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	94%
Blast2go	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	GO:0009871	Biological Process	94%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	defense response to fungus	GO:0050832	Biological Process	94%
Blast2go	chitin binding	GO:0008061	Molecular Function	94%
Blast2go	chitinase activity	GO:0004568	Molecular Function	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	0.0	94%
Blast2go	Lysozyme-like domain	IPR023346	-	0.0	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2N2

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 137 - 308

Fln protein: GKSIGSSNEGIVGVESLHCCCQCFFRLRHHRRSRYSERELAAFFGQTSHETTGGWPTAPDGPYSWGYCFKEEQGNPPAQYCQASSQWPCVSGKRYYGRGPVQISWNYNYGPAGKAIGFDGINNPDIVASDATVSFKT

Protein Length: 138

Fln nts: CCGGAAAAAGCATTGGCAGCAGCAATGAAGGCATTGTAGGAGTAGAATCCCTTCATTGCTGCTGCCAATGCTTTTTCCGGCTTCGGCACCACAGGCGATCTCGCTACTCGGAAAGAGAGCTCGCTGCTTTCTTTGGCCAAACCTCCCACGAAACCACAGGGGGATGGCCGACAGCACCAGATGGCCCATACTCCTGGGGCTATTGCTTCAAAGAGGAGCAAGGCAATCCACCCGCCCAATACTGTCAAGCATCTTCCCAATGGCCCTGCGTGTCTGGAAAGAGATACTATGGACGAGGACCGGTTCAAATATCATGGAACTACAACTATGGACCGGCCGGCAAAGCAATCGGATTCGACGGCATCAACAACCCTGACATTGTTGCTAGCGATGCCACGGTCTCCTTTAAGACGGC

Fln Alignment:

sp_v1.1_unigene16064___AAFFGQTSHETTGGWPTAPDGPYSWGYCFKEEQGNPPAQYCQASSQWPCVSGKRYYGRGPVQISWNYNYGPAGKAIGFDGINNPDIVASDATVSFKT
A9P2N2_______________AAFFGQTSHETTGGWPTAPDGPYAWGYCFKEEQGNPPGEYCQASSQWPCASGKRYYGRGPVQISWNYNYGPAGKAVGFDGINNPDIVANDATVSFKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain