SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16056

Length: 964 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	autophagy 8h, putative	-	-	3.0e-38	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	autophagy associated protein atg8	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	macroautophagy	GO:0016236	Biological Process	82%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	82%
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	82%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	82%
Blast2go	conjugation with cellular fusion	GO:0000747	Biological Process	82%
Blast2go	microtubule binding	GO:0008017	Molecular Function	82%
Blast2go	Atg8 ligase activity	GO:0019776	Molecular Function	82%
Blast2go	APG8-specific protease activity	GO:0019786	Molecular Function	82%
Blast2go	APG8 activating enzyme activity	GO:0019779	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	autophagic vacuole membrane	GO:0000421	Cellular Component	82%
Blast2go	CVT vesicle membrane	GO:0033110	Cellular Component	82%
Blast2go	vacuolar lumen	GO:0005775	Cellular Component	82%
Blast2go	anchored to membrane	GO:0031225	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
235	87			12	0.992554
241		11	88		0.923564
242	88		11		0.923564
243	88			11	0.923564
245	88		11		0.923564
251			88	11	0.923564
255	88		11		0.923564
259		88	11		0.923564
261		11		88	0.923564
262	11		88		0.923564
263		11		88	0.923564
264	88			11	0.923564
265	88	11			0.923564
272			90	10	0.90298
275			90	10	0.90298
277	90		10		0.90298
298			90	10	0.90298
434		20		80	0.995493
437		80	20		0.995493
441	80	20			0.995493
446	80	20			0.995493
448	80		20		0.995493
449	80			20	0.995493
452	75	25			0.996473
453			75	25	0.996473
454	75	25			0.996473
526		80		20	0.995493
528	80		20		0.995493
529			80	20	0.995493
532	80	20			0.995493
533		20	80		0.995493
534	80			20	0.995493
535			80	20	0.995493
536		80	20		0.995493
537	80		20		0.995493
540			20	80	0.995493
542		20		80	0.995493
543	20			80	0.995493
544		20	80		0.995493
546		20	80		0.995493
547	20			80	0.995493
831	12		87		0.999973
915		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain