SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16054

Length: 1173 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16054

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal ion binding protein, putative	-	-	2.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	unknown [Picea sitchensis]	-	-	4.68594e-42	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	4.68594e-42	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	4.68594e-42	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heavy metal-associated domain, HMA	IPR006121	-	4.68594e-42	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMX0

Fln msg: your sequence is longer than subject: 212 - 156

Fln protein: MNSPITDSYYSFKESPEPRGEGQINRRAPSSRGLQGYSISEAVKMSKKIVLKVELNCQKCIRRAMETLAGIEGVVSIDVDEKDRKITVIGDADPVCLTASLRKFGFADLVSVGPSKEPKPNNPGPEKKAEPDKKQQDKKTEADKKEAEKKPDKKQAEKNPTEQKASEKKAADQQEPSQQNYTYIILPKSCDHCCTDTYYWSDENPNACCIV*

Protein Length: 213

Fln nts: ATGGGGACGCATTGTATTATTATTGCTGACCTCAGCGATTGCAAGCCTGGCTGAC_-_ATGAATTCTCCTATCACCGACTCCTATTATTCATTTAAAGAGTCGCCCGAGCCAAGGGGAGAGGGGCAGATAAACAGAAGAGCTCCTTCATCCAGAGGTCTCCAAGGTTATTCCATTTCAGAAGCAGTAAAAATGTCGAAGAAAATCGTGTTGAAAGTCGAATTAAATTGTCAAAAATGCATACGGAGGGCTATGGAGACGCTTGCAGGGATTGAAGGGGTTGTCTCTATAGATGTTGATGAGAAAGACAGAAAGATCACTGTGATTGGAGATGCAGATCCCGTGTGCCTTACGGCTAGTCTCAGAAAATTTGGATTTGCAGATCTGGTGAGCGTCGGACCTTCTAAAGAACCAAAACCGAACAATCCTGGTCCCGAAAAGAAGGCCGAACCAGACAAAAAGCAACAAGATAAGAAGACTGAAGCTGACAAAAAAGAGGCCGAGAAGAAGCCTGACAAAAAACAGGCCGAGAAGAATCCTACTGAACAAAAGGCTTCCGAGAAAAAGGCTGCCGACCAGCAAGAACCGTCGCAACAGAACTATACTTATATCATTCTTCCAAAGAGCTGTGATCACTGCTGCACCGATACTTATTACTGGAGCGACGAGAACCCCAATGCCTGTTGCATTGTTTGA___ATTTCTTGATCCATCTTTTAATTTCAAGTCATAAATTTATATCCTTTAGTATTCACTTGATCTGCATCCTCAAAACGGCTTTGCCTTGCCTCATATGGATAGTGAAATAGCGTTTGGCGTATTAATTTAAGGGGAAATAGTGTTTGGCCTATTAATCTCAGCGGAAGATGTATCGACTAAAGATAAATGCGCGGATCTGCGGCCTTCTCGGACACAGATTTAAGTCTTTTCTCTGCACGAATTTTACAGCAATGCAGTAATTATGTTTTTGTTCTCAAATTCAAATGCTGTAAATATTACATAATATTGTTTGGTTATAATGATTTCTGGTACAAATTGAAGAAAGTAAAGTGCGCCATATGGACGATGTGTAGTTTCTTTGTAATATTTAAATGCGACTGAAAAGCTTAAGCATTGAATTTGGGACAGTTGTTATACACTTCGATTACTTTGTCGCTTGATCTGTGAATTAAAATCTGAGC

Fln Alignment:

sp_v1.1_unigene16054___MSKKIVLKVELNCQKCIRRAMETLAGIEGVVSIDVDEKDRKITVIGDADPVCLTASLRKFGFADLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPTEQKASEKKAADQQEPSQQNYTYIILPKSCDHCCTDTYYWSDENPNACCIV
A9NMX0_______________MSQKIVLKVQLNCEKCVRRAMETLSGIEGVVSIAVDEKNKQITVIGDADPVSLTASLRKFGFAELVSV----------GPSKEPEKKPVPEKKPEAGNKQAEKKPEADKKQAEKKPVEQKAPEKKAADKQEAPQQNFTYIILPTSCDH-SSYTYYWSDENPNSCCIV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
407	88		11		0.923564
489	85			14	0.993533
490	85		14		0.993533
491	85		14		0.993533
492	85		14		0.993533
885		64	35		1.0
986	38	61			1.0
1039		25	75		1.0
1108	16			83	0.994512
1127			33	66	0.997452
1143		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain