SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16043

Length: 2366 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene16043
CGTCGTGACCTTGGCTGTCACTCAGTTGTTCGTTGCTTGTGATGCGGTGTTGTCGGCGACCCGTGAATTCGACTCATGTTACTGATCTGTTGTGTATAGATACGTGAACTTAACAGTGCCCTGGATGAATAATCGGTTAATTTCATCCTGGCTTTGAGATGGACTGCACTGGTATTTTGCTAGCAGTGTCAAGGCTTGTTTAAAAGGCTATAATTTAGGTCGAAAATCATAGTCAGGGAGATGGGTTTTGTGAGTACTTTAGTGGGTTTCCTCGGCTTTGGCGTGGGCGTTACAATTGGTGTTACTATTGGGTATTTCCTTTTCATCTACTTCCAGCCCACTGATGTGAAGGACCCTATTATCAGGCCTCTTGGAGAATTAGATTCAAAGACTTTGGAAGGACTCTTACCTGAAATTCCATTATGGGTGAAAAATCCTGATTATGATAGAGTTGATTGGCTCAACACGTTTATTCATGATATGTGGCCTTATCTTGATAAGGCAATCTGTCGGAAAATAAGAGACACTACAAAGCCTATGATAGACCAATATGTTGGGAAGTTCAAAATAGAATCTATTGAATTTGAAACACTTACATTGGGCACACTTCCTCCTACACTGCAAGGGATGAAAGTCTATGAAACTCAAGAAAAGGAACTGATCATGGAACCTGCTCTCAAATGGGCTGGAAATCCAAATGTGATTGTGGCAGTGAAAGCATTTGGACTAAGGGCAACTCTGCAGATGGTGGATTTGCAGGTATTTGCAGTTCCACGTGTCACACTGAAGCCTCTTGTCCCAAGTTTCCCATGCTTTGCAAAAATATTTGTCTCTCTTATGGAGAAGCCCCATGTTGACTTTGGACTAAAATTACTTGGTGGTGATGTTATGGCTATCCCCGGTCTTTACCAATTTGTCCAGGAAATGATTAAAGAGCAGGTTGCGAACTTATACTTGTGGCCAAAAACACTGGAGGTACCTATTTTGGACCAGAGAGCTACACATAAACCTGTTGGCATGCTCCATGTAAAGGTCATTAAGGCAACTGACTTAAAAAGAAAGACATGCTGGGTAAGTCCGACCCATATGTAAAGCTCAAGTTGACGGGAGAAAAACTTCCATCAAAGAAAACCAAAGTCAAACCAAGTAATCTGAACCCAGAATGGAATGAGGAGTTCAACTTTGTTGTTAAAGATCCAGAATCTCAAGTTCTTGAACTTACTGTCTACGACTGGGAGAAGGTGGGTTCACATGAAAAGATGGGTATGCAAGCTTATCCTTTGAAAGAGCTTACACCATCTGAGACCAGAAGTGTTACGCTGAATCTCCTTAAAACTTTGGATCCAAATGATCCTCAAAATATCAAACCACGTGGACAAATCACGCTAGAGATGACTTATAATCCTTTCAAGGAGGATGAAAATTTACCTGTTGATGAGGACGATAGTGTAGTTGAGAAGGCTCCTGAAGGCGCACCAGCAGGTGGAGGCTTGCTAGTTGTTAGAGTCATTGAGGCTGAGGATGTTGAAGGCAAACACCATACTAATCCTTATGCCCGACTTCTTTTGAAAGGGGAGGAGAGGAAGACTAAGCCTATCAAGAAAAACAGAGATCCAAGGTGGGATCAGGAATTTGAATTTATGTTGGAAGATCCACCTGTCAATGATAAACTCCATGTGGAAGTTATGAGCAAGGGCTCAGGCCTGGCATTGCATTCAAGGGAATCTCTGGGTTATGTTGACATTAATCTATCGGATGTGGTGAATAATAAACGTATCAATGAGAAATATCATCTTATTGATTCGAAGAATGGAAAAATTCAAATCGAGCTGTTGTGGAGAAGTTCTTAACCATCTTGCAGATGTATAATGCATTTGTTAGTCATGGTTATCCGATTTGGGAAAGATGAATTGCCTTTCTTTTGTAATCAGCATATGTTTTATCCAGCTAGCTGAAAGTTCTCATTACACAATGAGGAGGCTGTAGTGTCCTATAAGAATGAGAACCTTGTGTATTCTATTTAACAAAACTTGATTGTGTAAACTCAATTAGTTGCCTATGGCCATCTCCCAACATTTTCTACCTTGGACTTCTGTGTATTACATATCAGTATTGCTGCTGGAAAGAAATAGCTGTGCACTGTTGTTTTCCATTTCCGTTAGTGTAAAAAAAGGACTCGTGCTTTGTATTTCTTCATAAGTTTATCAGTTTGTTTTTGTTGTATTCTAATTGGGAAGACTTGATTCTCCAAATTCATTAGTTGCCTCTGGCTATATCTAAGCATTTGCTGCCTTGCACTTCATTTTCAAGCATATCGGTATTGTTGCCGAAAATATATAGCCATGCATTGTTATTTTCGGTTTCCA

Ace file of the UniGene sp_v1.1_unigene16043 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calcium lipid binding protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	plant synaptotagmin	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg: Overlapping hits, possible frame ERROR between 1062 and 1050,

Fln protein: MGFVSTLVGFLGFGVGVTIGVTIGYFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHDMWPYLDKAICRKIRDTTKPMIDQYVGKFKIESIEFETLTLGTLPPTLQGMKVYETQEKELIMEPALKWAGNPNVIVAVKAFGLRATLQMVDLQVFAVPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDVMAIPGLYQFVQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVIKATxxxxxxMLGKSDPYVKLKLTGEKLPSKKTKVKPSNLNPEWNEEFNFVVKDPESQVLELTVYDWEKVGSHEKMGMQAYPLKELTPSETRSVTLNLLKTLDPNDPQNIKPRGQITLEMTYNPFKEDENLPVDEDDSVVEKAPEGAPAGGGLLVVRVIEAEDVEGKHHTNPYARLLLKGEERKTKPIKKNRDPRWDQEFEFMLEDPPVNDKLHVEVMSKGSGLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKIQIELLWRSS*

Protein Length: 538

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTTCGTTGCTTGTGATGCGGTGTTGTCGGCGACCCGTGAATTCGACTCATGTTACTGATCTGTTGTGTATAGATACGTGAACTTAACAGTGCCCTGGATGAATAATCGGTTAATTTCATCCTGGCTTTGAGATGGACTGCACTGGTATTTTGCTAGCAGTGTCAAGGCTTGTTTAAAAGGCTATAATTTAGGTCGAAAATCATAGTCAGGGAG_-_ATGGGTTTTGTGAGTACTTTAGTGGGTTTCCTCGGCTTTGGCGTGGGCGTTACAATTGGTGTTACTATTGGGTATTTCCTTTTCATCTACTTCCAGCCCACTGATGTGAAGGACCCTATTATCAGGCCTCTTGGAGAATTAGATTCAAAGACTTTGGAAGGACTCTTACCTGAAATTCCATTATGGGTGAAAAATCCTGATTATGATAGAGTTGATTGGCTCAACACGTTTATTCATGATATGTGGCCTTATCTTGATAAGGCAATCTGTCGGAAAATAAGAGACACTACAAAGCCTATGATAGACCAATATGTTGGGAAGTTCAAAATAGAATCTATTGAATTTGAAACACTTACATTGGGCACACTTCCTCCTACACTGCAAGGGATGAAAGTCTATGAAACTCAAGAAAAGGAACTGATCATGGAACCTGCTCTCAAATGGGCTGGAAATCCAAATGTGATTGTGGCAGTGAAAGCATTTGGACTAAGGGCAACTCTGCAGATGGTGGATTTGCAGGTATTTGCAGTTCCACGTGTCACACTGAAGCCTCTTGTCCCAAGTTTCCCATGCTTTGCAAAAATATTTGTCTCTCTTATGGAGAAGCCCCATGTTGACTTTGGACTAAAATTACTTGGTGGTGATGTTATGGCTATCCCCGGTCTTTACCAATTTGTCCAGGAAATGATTAAAGAGCAGGTTGCGAACTTATACTTGTGGCCAAAAACACTGGAGGTACCTATTTTGGACCAGAGAGCTACACATAAACCTGTTGGCATGCTCCATGTAAAGGTCATTAAGGCAACTxxxxxxxxxxxxxxxxxxATGCTGGGTAAGTCCGACCCATATGTAAAGCTCAAGTTGACGGGAGAAAAACTTCCATCAAAGAAAACCAAAGTCAAACCAAGTAATCTGAACCCAGAATGGAATGAGGAGTTCAACTTTGTTGTTAAAGATCCAGAATCTCAAGTTCTTGAACTTACTGTCTACGACTGGGAGAAGGTGGGTTCACATGAAAAGATGGGTATGCAAGCTTATCCTTTGAAAGAGCTTACACCATCTGAGACCAGAAGTGTTACGCTGAATCTCCTTAAAACTTTGGATCCAAATGATCCTCAAAATATCAAACCACGTGGACAAATCACGCTAGAGATGACTTATAATCCTTTCAAGGAGGATGAAAATTTACCTGTTGATGAGGACGATAGTGTAGTTGAGAAGGCTCCTGAAGGCGCACCAGCAGGTGGAGGCTTGCTAGTTGTTAGAGTCATTGAGGCTGAGGATGTTGAAGGCAAACACCATACTAATCCTTATGCCCGACTTCTTTTGAAAGGGGAGGAGAGGAAGACTAAGCCTATCAAGAAAAACAGAGATCCAAGGTGGGATCAGGAATTTGAATTTATGTTGGAAGATCCACCTGTCAATGATAAACTCCATGTGGAAGTTATGAGCAAGGGCTCAGGCCTGGCATTGCATTCAAGGGAATCTCTGGGTTATGTTGACATTAATCTATCGGATGTGGTGAATAATAAACGTATCAATGAGAAATATCATCTTATTGATTCGAAGAATGGAAAAATTCAAATCGAGCTGTTGTGGAGAAGTTCTTAA___CCATCTTGCAGATGTATAATGCATTTGTTAGTCATGGTTATCCGATTTGGGAAAGATGAATTGCCTTTCTTTTGTAATCAGCATATGTTTTATCCAGCTAGCTGAAAGTTCTCATTACACAATGAGGAGGCTGTAGTGTCCTATAAGAATGAGAACCTTGTGTATTCTATTTAACAAAACTTGATTGTGTAAACTCAATTAGTTGCCTATGGCCATCTCCCAACATTTTCTACCTTGGACTTCTGTGTATTACATATCAGTATTGCTGCTGGAAAGAAATAGCTGTGCACTGTTGTTTTCCATTTCCGTTAGTGTAAAAAAAGGACTCGTGCTTTGTATTTCTTCATAAGTTTATCAGTTTGTTTTTGTTGTATTCTAATTGGGAAGACTTGATTCTCCAAATTCATTAGTTGCCTCTGGCTATATCTAAGCATTTGCTGCCTTGCACTTCATTTTCAAGCATATCGGTATTGTTGCCGAAAATATATAGCCATGCATTGTTATTTTCGGTTTCCA

Fln Alignment:

sp_v1.1_unigene16043___YFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHDMWPYLDKAICRKIRDTTKPMIDQYVGKFKIESIEFEXXXXXXXXXXLQGMKVYETQEKELIMEPALKWAGNPNVIVAVKAFGLRATLQMVDLQVFAVPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDVMAIPGLYQFVQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVIKATDxxxxDMLGKSDPYVKLKLTGEKLPSKKTKVKPSNLNPEWNEEFNFVVKDPESQVLELTVYDWEKVGSHEKMGMQAYPLKELTPSETRSVTLNLLKTLDPNDPQNIKPRGQITLEMTYNPFKEDENLPVDEDDSVXXXXXXXXXXXXXXXXVRVIEAEDVEGKHHTNPYARLLLKGEERKTKPIKKNRDPRWDQEFEFMLEDPPVNDKLHVEVMSKGSGLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKIQIELLWRSS
B8LRA0_______________YFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHEMWPYLDKAICQIIRDKTKPMIEQYVGKFKIESIEIETLTLGTLPPTLQGMKVYDTQEKELIMEPVLKWAGNPNVIVAVKAFGLRATVQLVDLQVFAIPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDLMAIPGLYQFAQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVVRAINxxxxDMLGKSDPYVKLKMTGEKLPSKKTTVKSSNLNPEWNEEFKFVVKDPESQALELSVYDWEKVGSHEKMGIQTYDLKELTPSETKSVTLNLLKSLDPNDPQNAKARGQITIEMTYNPFKEDENSPADDEDSVVEKAPEGTPAGGGLLVVRVLEAEDVEGKHHTNPYVRLLFKGEEKKTKPVKKNRDPRWDQEFEFMLEDPPVNDKIHVEVMSKGSSLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKLQLELLWRSS

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
626	12			87	0.992554
627		87	12		0.992554
628	87			12	0.992554
629	87		12		0.992554
632		12		87	0.992554
634	87		12		0.992554
637	12	87			0.992554
640	87		12		0.992554
644	12	12		75	0.975346
646	12	87			0.992554
648		14		85	0.993533
649		14	28	57	1.0
650	14	28	57		1.0
651	57	28		14	1.0
674		20		80	0.995493
675		20		80	0.995493
676	20		80		0.995493
677		80		20	0.995493
680	75	25			0.996473
681		25		75	0.996473
682	75	25			0.996473
684		75		25	0.996473
690	33	66			0.997452
707	66	33			0.997452
835	3		90		0.997544
982		90		9	1.0
1258		12		87	0.992554
1757	6		93		0.999453
1759	93			6	0.999453
1761		7	89		0.998606
1762			7	89	0.998606
1763	7		92		0.999532
1764		7		92	0.999532
1785	92		8		0.999718
1795	8			92	0.999718
1931			85	14	0.999981
2113	66		33		1.0
2165		33		66	1.0
2220	35	5	60		1.0
2284	18	81			1.0
2286		18	81		1.0
2360	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain