SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16041

Length: 1934 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16041

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PDT3; arogenate/prephenate dehydratase (EC:4.2.1.91)	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		86%
Blast2go	Biosynthesis of phenylpropanoids	01061		86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		86%
Blast2go	Biosynthesis of plant hormones	01070		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Biosynthesis of secondary metabolites	01110		86%
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		86%
Blast2go	Tetracycline biosynthesis	00253		86%
Blast2go	Histidine metabolism	00340		86%
Blast2go	Tyrosine metabolism	00350		86%
Blast2go	Phenylalanine metabolism	00360		86%
Blast2go	Tryptophan metabolism	00380		86%
Blast2go	Benzoxazinoid biosynthesis	00402		86%
Blast2go	Selenocompound metabolism	00450		86%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		86%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624		86%
Blast2go	Methane metabolism	00680		86%
Blast2go	Porphyrin and chlorophyll metabolism	00860		86%
Blast2go	Carotenoid biosynthesis	00906		86%
Blast2go	Phenylpropanoid biosynthesis	00940		86%
Blast2go	Flavonoid biosynthesis	00941		86%
Blast2go	Anthocyanin biosynthesis	00942		86%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		86%
Blast2go	Isoquinoline alkaloid biosynthesis	00950		86%
Blast2go	Insect hormone biosynthesis	00981		86%
Blast2go	Biosynthesis of type II polyketide products	01057		86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Biosynthesis of secondary metabolites	01110		86%
Blast2go	Prephenate dehydratase.	EC:4.2.1.51	-	86%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	86%
Blast2go	Biosynthesis of phenylpropanoids	01061	86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	86%
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	86%
Blast2go	RNA binding	GO:0003723	Molecular Function	86%
Blast2go	amino acid binding	GO:0016597	Molecular Function	86%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	86%
Blast2go	prephenate dehydratase activity	GO:0004664	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Blast2go	Prephenate dehydratase	IPR001086	-	86%
Blast2go	Amino acid-binding ACT	IPR002912	-	86%
Blast2go	Prephenate dehydratase, conserved site	IPR018528	-	86%
Blast2go	Chorismate mutase, type II	IPR020822	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ85

Fln msg:

Fln protein: MASKLCPASPALGFCNFSLPPKSRQLTETAFPKPATKAWRNSASVHQSRAERRIPRVMSSAQSATQKQDENQNGSVNLEAGTVSKDLVSLPRPLSVTDLATPPSHGSQVRVAYQGVPGAYSETAALKAYSHCDAVPCEQFEAAFQAVELWLVDKAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKLAVHHCLLGLPGVKKEELKRVVSHPQALSQCEHTLSTLGVIREAVDDTAGAAQFIAANNLRDTGAVASARAAEIYGLQILADGIQDDSDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDMTPTGRL*

Protein Length: 401

Fln nts: GCAGTGTAACTGAATTATACATCATAAATTTCGTGTTAGCTCAAGAAAACGCCAAGAAAGCGAATCAATTAACAGGAAACACTCGTTTACTCAAATGAATAAGACTCTGTCATAACCGAGGTGTTGAGGAACCAGGGAGTGTCGCAGGTATCGAATTTGGGACCAAGA_-_ATGGCCTCCAAACTCTGTCCAGCATCTCCTGCTCTGGGTTTCTGTAACTTCTCATTGCCGCCTAAATCGCGTCAATTAACCGAAACAGCATTTCCCAAGCCCGCCACGAAGGCATGGAGAAATTCGGCATCAGTTCATCAATCAAGAGCCGAAAGGCGAATTCCCCGTGTGATGTCATCGGCCCAATCCGCGACCCAGAAACAGGACGAGAATCAGAATGGGAGTGTTAACCTGGAGGCGGGGACAGTTTCCAAGGACTTAGTTTCTCTGCCCAGGCCTCTGTCTGTGACGGATCTTGCTACACCGCCGAGCCATGGTTCTCAGGTTCGTGTTGCTTACCAGGGAGTTCCTGGGGCATACAGTGAGACTGCAGCATTGAAAGCTTACTCACACTGCGATGCTGTTCCTTGTGAACAATTTGAAGCAGCATTCCAGGCAGTTGAACTGTGGCTTGTTGACAAAGCAGTCTTGCCTATTGAAAATTCACTTGGTGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGATTACATATAGTCGGGGAAGTGAAGCTTGCAGTTCATCACTGCCTTTTGGGTCTTCCTGGTGTGAAGAAGGAAGAGCTCAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCTCAATGTGAGCACACATTGAGCACTCTGGGGGTTATACGAGAAGCAGTAGATGATACAGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACGGGGGCTGTTGCAAGTGCTCGAGCTGCTGAGATTTATGGTCTACAGATTCTTGCGGATGGAATTCAGGATGATTCAGACAATGTAACTCGGTTCTTAATGTTGGCAAGAGAGCCTATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTTGAAGAGGGTCCTGGCGTTCTTTTTAAGGCCCTTGCAGTGTTTGCCTTAAGAGATATCAATCTAACGAAGATAGAAAGTAGACCTCAGAGGAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCAGCAAAGTACTTTGACTATCTCTTCTACATTGACTTTGAAGCTTCTATGGCTGATCCACGAGCACAAAATGCCTTAGGTCACCTACAGGAATTTGCAACATTTATGCGTGTTCTTGGCAGCTACCCTATGGACATGACCCCCACGGGTCGATTATAA___GCATTATTGGTGAGACTTATCATGATTTGATGTTCATGTAACTGAGAACTGGGTTGGTCATAAGCATAGATCTTCTCTAGATTAATATTTTCCTGCTTTGAGCACAGCGAAACAAATGTTCCAGCTCCCAGTATTTATCTTCTGCATGGCTTTTGTTTGAGAAGATGAAATTTGAGAGGGTGTGACACTAAGTTAACATTTTAAGGCAATTCGTCCTAATTGTCTGTTCGTCTCACCTCAAGCCACTTTTTAGTATATATCTCCACTTGCTGATATTTTTAAATATGTAGATACATACATGTCAGCATTTGGAGCTGCATTCCCCTGTTATTGTACTTGTAAGTAAACTTATGACTTATAGCTCTGTCTGACACCCAAGTGGACAATATTAATAGGATCAAAAGATTGATAGTGTATTGTATTCCGAAATTATTCTGCAGACCTCTATAAGGTTGATCTGTTTTGAAGTGCAGGCACATACACTACACAAATTTTTAAGATATCATTGATGATATCAAGGTAAATTTAAATAAATGTATATAAACATTTAATTATAATAGCTAGCT

Fln Alignment:

sp_v1.1_unigene16041___MASKLCPASPALGFCNFSLPPKSRQLTETAFPKPATKAWRNSA---SVHQSRAERRIPRVMSSAQSATQKQDENQNGSVNLEAGTVSKDLVSLPRPLSVTDLATPPSHGSQVRVAYQGVPGAYSETAALKAYSHCDAVPCEQFEAAFQAVELWLVDKAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKLAVHHCLLGLPGVKKEELKRVVSHPQALSQCEHTLSTLGVIREAVDDTAGAAQFIAANNLRDTGAVASARAAEIYGLQILADGIQDDSDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDMTPTGRL
B8LQ85_______________MASKLCPSSPALGFSNSLLLPKSRQSTETAFPKPTTKLWRNSARSASLHQSGAEWRIPRAMSSAQSATQKQDENQNGSVSLESGTVPKDLVSLPRPLSVTDLATPPSHGSQVRVAYQGVPGAYSEAAALKAYPQCEAVPCEQFEAAFQAVELWLVDKAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQLAVHHCLLGLPGVKKEELKRVVSHPQALSQCEHTLSTLGVIREAADDTAGAAQFIAANNLRDTGAVASARAAEIYGLQILADGIQDDSDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDMTPTGRL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
394	10		90		0.90298
1284	88			3	0.998862
1394	91			8	0.999807
1398		8		92	0.999718
1522	76	23			1.0
1761	41			58	1.0
1807		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain