SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16040

Length: 654 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16040

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S16 n=21 Tax=Embryophyta RepID=RS16_GOSHI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	97%
Blast2go	lipid A biosynthetic process	GO:0009245	Biological Process	97%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	97%
Blast2go	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	GO:0008759	Molecular Function	97%
Blast2go	cell wall	GO:0005618	Cellular Component	97%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	97%
Blast2go	chloroplast	GO:0009507	Cellular Component	97%
Blast2go	membrane	GO:0016020	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S9	IPR000754	-	97%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	97%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	97%
Blast2go	Ribosomal protein S9, conserved site	IPR020574	-	97%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
141	85		14		0.993533
166		14		85	0.993533
557		75	5	20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain