SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16017

Length: 1434 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16017

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREG-like protein (Fragment) n=1 Tax=Picea mariana RepID=O65065_PICMA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	80%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cyclin-like	IPR013763	-	0.0	80%
Blast2go	Cyclin PHO80-like	IPR013922	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP68

Fln msg:

Fln protein: MQSGIRREWAATEDGGLGVEEEEEGYECPSESQLPRILSVLSYTLQRLVTRNDQFALPADGKKITVFHGVRSPAITIAKYLERIYKYTSCSPSCFVVGYVYIDRLVHKQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNSELNRLEIDFLFRLAFRLKVTAKVFESYCLHLEKEMLVGATGQRIERTLPGFLGVSSDSDSAKREEPKVTRCASATAMVVGHHPDPPSR*

Protein Length: 243

Fln nts: GAGAGGATTAGAGGCTGCTTTGCTGTGTCCGAAAACTTTCCCTTCCCCAAATTATTGTCCAAACGTCAGACGGTCGCGCGATCGAATCTCGATCCAATCTTCGAGTGGTCGGGTTTTCGAGTCTCCTGCCATCTCGATTTATGGCGATTCGTGCCTTAAGACTGCGGGCTTG_-_ATGCAATCCGGGATTCGCCGAGAGTGGGCGGCCACGGAGGACGGGGGACTCGGGGTCGAGGAAGAGGAGGAGGGATATGAATGCCCGTCCGAGTCGCAGCTGCCTCGAATCCTCTCCGTGCTCTCCTATACCCTCCAGCGTCTGGTCACACGGAATGACCAATTCGCTCTTCCCGCTGATGGAAAGAAGATAACGGTGTTCCATGGCGTACGCAGTCCGGCCATCACCATAGCCAAGTACCTGGAGCGGATTTACAAGTACACCAGCTGTAGCCCCTCCTGCTTCGTCGTAGGCTACGTCTACATAGATCGCCTTGTTCACAAGCAACCGGATTTCCCAGTCATTTCCCTTAATATCCATCGCCTGCTCCTCACCAGCGTCATGATCGCCGCGAAGATGCTCGATGATGCGCACTATAATAATGCTTTCTATGCCAGAGTGGGCGGCATTAGCAATTCCGAGCTTAACCGGCTCGAAATCGACTTTCTTTTCCGTCTCGCTTTCCGATTGAAGGTCACGGCTAAAGTATTCGAAAGCTATTGTTTGCACTTGGAGAAGGAAATGCTCGTAGGTGCCACGGGACAGAGGATAGAGAGGACTCTACCCGGATTTCTTGGGGTTTCATCGGACTCCGATAGTGCCAAGCGCGAGGAGCCTAAGGTTACCCGCTGTGCTTCTGCGACAGCCATGGTGGTCGGACATCACCCCGATCCTCCTAGCCGGTGA___ATGTGGAGGCCGCTTATGGTGCAGGGGACATGCCTGCCTCTACCTAGCAGTTGTCAATAGTATTTGCTAATCAGGTACACATGGACTGACCCTAATCTTTTAGGGCAAGCATTATCTACCAAGCAGTAATGCAAAATATGCTGGAATGTTCGCCGTTGGATTAAAAGTAAACATTGATATCCCAACGTTGAAATTCTATTACTGGGTGCTTATTTATCACCGTTTTTAAGAATGTCTGTACATTTTTTCGTTTCTAAGAATGTCTTACGGGGACAGGGTGTTGCTTTGAAAAATAACTGAAAGTAACCGTCTGTATTCTTGTGGTGATTGGAATTAATGCGAAGACTGTAAAATTCTTTAAGAAGTAACACTATCAGCTTTTGCAGAAAACTTCTTTTACCTTTGAATGGCCGAGTGAGGATTTTGAAAACTATCCTATAAATGTCGTGTCAATTAAATGGAATTCTCAGTTTTGATTTTAGAATTTGATCATTTACCATTAATTAATGGCGGCATTGTAGTACATATATTTTTAG

Fln Alignment:

sp_v1.1_unigene16017___MQSGIRREWAATXXXXXXXXXXXXXXXXXXXSQLPRILSVLSYTLQRLVTRNDQFALPADGKKITVFHGVRSPAITIAKYLERIYKYTSCSPSCFVVGYVYIDRLVHKQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNSELNRLEIDFLFRLAFRLKVTAKVFESYCLHLEKEMLVGATGQRIERTLPGFLGVSSDSDSAKREEPKVTRCASATAMVVGHHPDPPSR
A9NP68_______________MQSGIRRERPATEDGGLGVEEEEEGYECPPESQLPRILAVLSYALQRLVTRNDQCALPADGKKITVFHGVRSPSITVAKYLERIYKYTSCSPSCFVVGYVYIDRLVHRQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNTELNRLEIDFLFRLGFRLKVTGKVFESYCLHLEKEMLLGTAGQRIERTLPEFHRVSLESDSAKREESKVPRCSSATAMVVGHHPDPPSR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
663			7	57	1.0
744	11		88		0.923564
1319		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain