SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16015

Length: 1295 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16015

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA	-	-	91%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	cyclophilin	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	94%
Blast2go	peptide binding	GO:0042277	Molecular Function	94%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	94%
Blast2go	cytoplasm	GO:0005737	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	94%
Blast2go	Cyclophilin-like	IPR015891	-	94%
Blast2go	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	IPR020892	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5HIY2

Fln msg:

Fln protein: MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL*

Protein Length: 173

Fln nts: ATGGGGACTCCGGTGTCCGATCGAACGGTTGAGATATTGTCTCAAGATTTTTTCTTCTGACTCTGGAATTTATATAGCGGTCAAGGGGGAGCTCTGGAATTCATTCGGCGCTCATCAGTGTATACGACTTTAAGACTGAGCTTTCGATTTGCAGTAGCGACTAAA_-_ATGCCGAACCCTAAGGTTTACTTCGACATGTCCGTGGGGGGCGCGCCCGCCGGAAGAATCGTGATGGAGCTTTTTGCTGACGTTACGCCTAAGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGAAACGGCACTGGCGGTGAGTCCATTTACGGTAACAAGTTCCCCGACGAGAATTTCGTGAAGAAGCACACCGGGCCGGGAATCCTGTCGATGGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCAAAGACAGAGTGGCTGGACGGGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGA___ACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGTGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTTAAGTGACTAACGACGACTCTTGTGGAGTCGTGGGACTAGCTTATATTTCCATGGGATACTCTCACATTTGAAATCTTATGATAATTATTACATGGTGTGGCTTGCTTTTTACGGTCATGTGAGGGCCATGAGGTTGTGCCCCACTGAATCTTTTTCCTATCATAGTGAATGCCGCCCTTCTGTCGCATATGTTTTAGATATTTGACAAATTTTATCGCCAAATAAAATGGCATTATCTAACAAACGTGATGGAAAGTTTGAACCAGTTGTCCTTTTCAATGGTTTATCCCTTTATTAATTAATGCTTTACAAGTATTTTATATTAGTGAAAATTTGTCATTCTTGAATAAATCAATGCTTCTTATCATGTGATTTTCAATGGTTTTTGCCTTTCCTTATGGATAAGGGAGAAATGTAAAATATCTCTTATCTTGAGGTTGTGTGTGCAAGTAGAATAAAATCGAATTAGAAATCACCTAGC

Fln Alignment:

sp_v1.1_unigene16015___MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQXXXXXXXXXXXXESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL
A5HIY2_______________MPNPKVYFDMSVGGAPAGRIVMELFADVTPKTAENFRALCTGEIGVGKSGKPLHYKGSAFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVKAIEGVGSSSGRTSKPVVIADCGQL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
272	75		25		0.996473
316		25		75	0.996473
369	16			83	0.994512
1009	90		10		0.999898
1094		10		90	0.90298
1132			16	83	0.994512
1144	50		25		0.995533
1145			75	25	0.996473
1147			25	75	0.996473
1152	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain