SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16013

Length: 1882 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16013

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	rpiA; ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	ribose-5-phosphate isomerase a	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribose-5-phosphate isomerase.	EC:5.3.1.6	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	75%
Blast2go	Carbon fixation in photosynthetic organisms	00710	75%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	75%
Blast2go	Biosynthesis of plant hormones	01070	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ribose-5-phosphate isomerase.	EC:5.3.1.6	-	0.0	54%

Source	KEGGs	Term	Identity
AutoFact	Pentose phosphate pathway	00030	54%
AutoFact	Carbon fixation in photosynthetic organisms	00710	54%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	54%
AutoFact	Biosynthesis of plant hormones	01070	54%
AutoFact	Metabolic pathways	01100	54%
AutoFact	Biosynthesis of secondary metabolites	01110	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	pentose-phosphate shunt, non-oxidative branch	GO:0009052	Biological Process	0.0	75%
Blast2go	ribose-5-phosphate isomerase activity	GO:0004751	Molecular Function	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR5

Fln msg:

Fln protein: MAAAATMQVSFVSDRLISFKKTTAGELFGLKMVKFSSDMGGLGRASHRKIIASASSRAMEPVRIDALKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLFQQGKLKDVLGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIATMAKKSVILVDQSKVVLQLGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVRFPEGIKDPAALEKKIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELGEFVKSLKSVKEEYSTA*

Protein Length: 312

Fln nts: ATGGGGGAGGAATCATTACTTGCATCATCAGGCCCACGCTTCGTTAGCATAGAAGCGTTGGAGCTTCACATGGTGACAAAATAAGACAAATAATGGTATCTTCATCCGCACAATTGTTTATATTTGGTACGACTATTGAATAGAACCACCATTGTTTATATTTGGTATGACTATTGAATAAAACCTCAATGCAAATTATTTCATTAATACTACCTAGATTCCCAGGACAAAGTGTATTGAAGATGAGAATATTCTCTGGTTAACAGTGGTGACGCCATCACTTCTCTCTAAACACGTGACACATGTTATTCGAGGGTCTACATTTGTTTACGAGGGAGAAGGATACTGGATCCTGCTCACTTGTATTTCCACTAGAGTTGACTAATTAATGACATCGACATCCTCATCTTCTTCTCCTCTTCTTCGGCTGTTCTCAGTACTGTGACAACTTCATTATTTCTTTCTTTCGGAATAATCAGTACTTCTTCATCTCGGCTCGCAGTTGTTCTATACAGAGCC_-_ATGGCAGCGGCAGCTACAATGCAAGTTTCGTTTGTTTCAGATCGTTTAATTTCGTTCAAGAAGACAACAGCAGGGGAGTTATTTGGCCTGAAAATGGTAAAATTTTCAAGTGACATGGGAGGGCTGGGGAGAGCCAGCCACAGGAAGATTATCGCGTCAGCATCTTCCCGCGCAATGGAGCCAGTACGAATAGATGCCTTGAAGCGTGCTGTTGCTAAGCGAGCTGTAGAACTTGTCAAACCAGGAATGGTGATTGGTCTTGGGACTGGTAGCACAGCTTCATTAGCAATTGAAGAATTAGGGAAGCTTTTTCAACAAGGAAAGTTGAAGGATGTTCTTGGAGTGGGAACAAGCTACCAATCACGGGTTCTTGCTCGGCAATTCGGTGTTAAAACAGTTGACTTAAATGATGTTATTCACATTGATATTGCATTTGATGGTGCAGATGAAGTTGATCCTTCCATGAACATTCTAAAGGGTGGGGGAGCTGCTCATACTATGGGGAAGGTTATTGCCACCATGGCCAAAAAGTCTGTGATATTGGTGGATCAATCGAAAGTTGTGTTACAGCTTGGACAAATTTTTCCTGTGCCGGTTGAAGTTCTTCCTCCAGCAATTTCTCCTGTTCTACGGCAACTTGTCGCTCTTGGAGGAGTGCCTGAAATTCGTAGTGCCCTGAGGAAAGATGGTCCTGTGATTACGGACTTTGGAAATATGGTTGTTGATGTCAGGTTTCCGGAAGGCATTAAAGATCCTGCTGCTCTAGAAAAGAAAATCAAGTTGATACCCGGAGTTGTTGAAAATGGTCTTGTTACAGGGGTTGCAAGCTCTGTTTTGGTTGCTACACAAGATGGGGATGACATCACCATTGTCGAGTTAGGTGAATTTGTCAAGAGTCTGAAAAGTGTCAAGGAAGAATACTCCACAGCATGA___AATCCTGGACATTATATGCTTGTTACAGTTTTTAAGAGAGGAGACGTACCTCTCACATGTACAGCTTTTTATTGTCATGCTTTCAGTTGATGGATGATTGTTGTAGTCCTGTCATTGGTTGGACAATTTTCATCATCCTAAAGATCCAAGAATTCATGTGGCAAGAAACTTTAATAAAGTCAAATATAATCCGATGACGTAACCCTATCAAGTATTTGGCATCTGGTTGTGCATGTAGACCCACCAATCTTCATTAAAATTTTAAATCCTTTGTGATATTCGGCTTGGATGCATAAGTATCTGGATTAATTAAGACTAGTTTTTGCAGCCATTGTTCACTTTGTGAATGATTGAATTAGCTGCTTGTCTTTAAAGTTTAGGCTATTTCATGTAAATTCTCAACGAAACACTAGAATGTTTGTTTTCTTGC

Fln Alignment:

sp_v1.1_unigene16013___TMQVSFVSDRLISFKKTTAGELFGLKMVKFSSDMGGLGRASHRKIIASASSRAMEPVRIDALKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLFQQGKLKDVLGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIATMAKKSVILVDQSKVVLQLGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVRFPEGIKDPAALEKKIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELGEFVKSLKSVKEEYSTA
B8LQR5_______________TMQASFVSDRLISFKKSTAGELFGLKTVKFSSEMGGLRRPSQRKNITLASSQATEPLLQNTLKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLIQQGKLKDVVGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIDTMAKKSVILVDQSKVVFELGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVSFPEGIKDPAALEKRIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELDEFVKSLKSVKEAYSKA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
830			80	20	0.995493
836		83		16	0.994512
837	83		16		0.994512
838	83		16		0.994512
1035	83	16			0.994512
1144		16		83	0.994512
1147		16		83	0.994512
1148		80	20		0.995493
1152		20	80		0.995493
1153			80	20	0.995493
1154		80		20	0.995493
1155	80		20		0.995493
1156	80		20		0.995493
1163	20		80		0.995493
1455	45	54			1.0
1479		12		87	1.0
1625		68		31	1.0
1744	6		66	26	1.0
1780	85	14			0.993533
1796			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain