SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16010

Length: 1448 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16010

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type A response regulator RR1 n=1 Tax=Phaseolus vulgaris RepID=B0YGG5_PHAVU	-	-	4.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	type a response regulator	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	71%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	71%
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	71%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	71%
Blast2go	response to stress	GO:0006950	Biological Process	71%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	71%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	cytoplasm	GO:0005737	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	71%
Blast2go	CheY-like superfamily	IPR011006	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL1

Fln msg:

Fln protein: MEEDGVKITFGDSQAITVGEAATDGHEMHVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHATATVCSNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPVQRDDIKKITGYIKVSKHVATTPICRKRKVSSVVLAGKNSERRPRISGVTVA*

Protein Length: 198

Fln nts: ACAATGGGGGATATGTCGTGGCGTATTTGGGGATCTCAGGAATATGCGACGGCAAATTTTGGGAAAAATATTTGTTGGCAGGTACTTTATGGCATGCTATGGGATTGGATCGCGCGACCTTTAGTGGATCCTCTCACGCTTTTCGTTCCCCAATAATAAAGAAAGAACTCGGACGCTTCAGGCTCAAGCTTTTGTTACAGTGTGTTCGCGATGAGATAACAACGAGGACTTGCTTTGCAGGCCTGATAAGAGGGTTCGAAGCCATTTCGCTTAGGGTTTTTGAAGGACGGCGCTGAACTGGACAGAGTGACGGTCGTCAGTTCGATTCCCGGCGGTGGCGATTCTGGTTTAAAAAGTAAAGCGGGTGTAATTTTCTGCCCTCCTATAAGAAGAAAACTTGATGGATACGATTTTTCGTTATATCTTTGCGCCGTTGCCGTGACCTGCAATGTACAGCAGTACGAGAGTCGCGGCTGTTTGGAAAGCCTAGTAGGCGGGATATTATTTCGGCCGCGACTGAGTCTTGCCTGTCTGTGGCAATC_-_ATGGAAGAAGACGGAGTGAAAATCACTTTTGGCGATTCGCAGGCGATCACTGTGGGGGAAGCAGCGACCGATGGCCATGAGATGCATGTTTTAGCCGTAGACGATTGTCGTGTTGATAGAATGGTCGTTGAGAGACTGCTGCGGTCAGATTCTGTGAAAGTCACTGCCGTGGACAGTGCTGCCAAGGCGCTTGAACTTCTTGGAGTAAATAAAGAACACGCGACAGCCACTGTCTGCAGTAATCCATTGAAGTTCAGTTTGATTATCACAGATTATTGCATGCCAGAACTGACGGGCTACGATCTCCTCAAGAGACTCAAGGAAATCAAGGGTTTGAAGGAGATACCTGTAATTATAATGTCATCAGAGAATGTGCCACAGCGAATTCAAAGGTGTTTAGATGAAGGAGCCGAAGACTTCATTGTCAAACCCGTGCAACGGGATGACATCAAGAAGATAACGGGGTATATCAAGGTATCGAAACACGTGGCTACCACGCCTATATGTAGAAAACGGAAGGTTTCATCCGTCGTGTTAGCGGGAAAAAACTCAGAGCGACGACCTCGAATCAGTGGCGTTACAGTTGCTTGA___ATCTGACTGGTTTGCTCGCATTTTAAAGAACAGGGCATCTGACCATGTAAAGTGTTGTTCGAGGTGTTGCAGTATTTTCTTTGAATTTCGTGAAATTTATAAGTCGAGTGATTCTCTGAGAGGGTTTACAACAACTTTACTGAATGTTCGTTTTCCTGTAATAATGATGGCGGCCGTTTCTGTTTTATTTTTTGAGTTTCGCTGGGCGTTTCTGCTTATTGTAAATGAACTCTGTATGTGGAGGTCTTTGATATCAACACGGAAGAAGTTGCGTATTGTATCCCTAATATTGCATCCATTTTTATTGCTATTAAG

Fln Alignment:

sp_v1.1_unigene16010___EMHVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHATATVCSNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPVQRDDIKKITGYIKVSKHVATT--------PICRKRKVSSVVLAGKNSERRPRISGVT
A9NWL1_______________EMHVLAVDDCLIERKVIEKLLKTNFFKVTTVDSAERALEVLGFHEEQSTCAA-SNAFKVNMIITDYCMPGMTGYDLLKKVQETKCLKEIPVVIISSENVPQRITSCLAGGAKDFIIKPLKLADVTKLKGHIKPPKDVVSTSANASSSGPVSSKRKISSGRARGKMSERRPRVGGLT

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1092	83		16		0.994512
1111		88	11		0.923564
1115	88			11	0.923564
1116	88		11		0.923564
1117	11			88	0.923564
1120			88	11	0.923564
1127		11		88	0.923564
1130	88			11	0.923564
1131		11	88		0.923564
1132	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain