SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16008

Length: 1064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16008

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L23A n=3 Tax=Magnoliophyta RepID=RL23A_FRIAG	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	60s ribosomal protein	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	rRNA binding	GO:0019843	Molecular Function	95%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	95%
Blast2go	ribosome	GO:0005840	Cellular Component	95%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
14	66			33	0.997452
16			33	66	0.997452
33	6	12		18	1.0
34	6	6	68	18	1.0
35	6	12	75	6	0.999931
37	72	4	9	4	0.998863
38	77		18	4	1.0
39	86		13		1.0
343	97			2	0.967822
351		2		97	0.969538
383	92	6		1	1.0
385	94			5	1.0
386		96	3		0.999962
388	93	3	1	1	0.998854
389		3		96	0.999965
390	93		2	3	0.998974
391	94		1	3	0.999794
392		95	4		0.99997
393	93		4	1	0.999182
396		94	5		1.0
398	1	4		94	0.999862
399	4	1	94		0.999862
410		3		96	0.983282
418			92	1	0.999982
484	95		4		0.995881
518	5		94		0.997984
588			96	3	0.988939
647		4		96	0.99411
651	94		3		0.960243
654	94		3	1	0.960243
655	94			3	0.960243
658	92	6			0.999991
761	8		91		1.0
885			83	16	1.0
948	51			48	1.0
1031	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain