SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15998

Length: 1502 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15998

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copine, putative n=1 Tax=Ricinus communis RepID=B9RAR5_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin metabolic process	GO:0009690	Biological Process	78%
Blast2go	auxin metabolic process	GO:0009850	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	0.0	78%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP8

Fln msg: your sequence is shorter than subject: 370 - 423

Fln protein: VVTLAVTQLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGAKSFNHQSLHHIGDTPNPYEQAISIIGRTLSAFDEDNLIS*PWLSLDVSTHDQNVFSFYPDNRVCNGFEEALRSYREIVPHLRLAGPTSFAPIIDAGIRIVEQSGGQYHVLLIIADGQVTRSVDSDNGQMSTQEQNTVNAIVEASDYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADSFQTNSSRNRCVDSFAGSAPPEAKDTQDAQLCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY*

Protein Length: 371

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGATGAGGTGACTGCAGCTCTTGCACAGGCTGGCCTTGAATCTTCCAACTTGATTGTGGGGATTGACTTCACAAAGAGCAATGAGTGGACAGGTGCAAAGTCTTTTAACCACCAAAGTTTGCACCACATTGGAGACACTCCAAACCCTTATGAACAAGCAATCTCAATAATTGGGCGGACCTTGTCTGCTTTCGATGAGGACAACTTGATCTCTTGACCTTGGCTGTCACTCGATGTTTCAACACATGATCAAAATGTGTTTAGTTTCTATCCAGATAATAGGGTATGCAATGGATTTGAAGAAGCATTGAGATCCTACAGGGAGATaGTcCCACATCTTCGAtTGGCTGGGCCAACATCTTTTGCgCCAATaATTGAcGCtGgAATCCGTATTGTGGAACAGAGTGGTGGGCAGTACCATGTTCTaTTGATAATTGCAGAcGGACAGGTAACAAGAAGTGTtGACAgTGACAATGGACAAaTGAGTACACAAGAACAGAATACAGTCAATGCAATAGTGGAAGCCAGTGAcTATCCACTATCAATTGTCTTAGTTGGAGTGGGAGATGGGCCTTGGGACATGATGCGGCAGTTTGATGATAATATTCCAGCTCGAGCATTTGACAACTTCCAGTTTGTGAACTTTACAGAGATTATGTCGAAGAATGTTGCTCAATCTAGGAAGGAGACTGAGTTTGCCCTTGCATCACTTATGGAAATACCATCTCAGTACAAGGCCACACTGGATCTTCAAATACTGGGTCGCCGCAGAGGCAAGATGCCTGATAGGTCTCCTCTTCCACCAGCACTTGGCAATGATAATTATGCTGCTAGGCAACAATATCAGCGTGCAGACAGTTTCCAAACAAATAGCTCCCGAAATCGTTGTGTTGATTCCTTTGCAGGATCTGCTCCTCCAGAAGCCAAGGATACACAGGATGCTCAACTGTGTCCAATCTGCCTGATGAATGCTAAAGATCTTGCTTTTGGATGCGGTCATCAGACCTGTTATGACTGCGGACAGAACATTGTTACATGCCCTATATGTCGCAGTGATATCACAACCAGGATAAAACTGTATTAA___AGTCAATGCAGATTTCGCAGAAAGATAAATATCTATTATGACTTGGCCATCTGAAATACGCCGAATCGGGGCTGGATTGGCATGGGTCCATGTTCTATTGTGTGGATTTGCACAGTAGCTACGAGAGAAAAGCTTATTATTATTTTTGGTGTATATATTTTCTGCATGCACCTTCCAGAGGTTTTGCTTGGATTCTAAACCACAATCACTAAATTTGTTCAGTTTGTAGATAATGCGTAATGCCCTTGTTGGACAGACCAAAACCAATTTTTATAATTTTTTTTAGTCACCGATGAGAAACGTACATTTATCTTGTAACCTGAATGCAATTTTGTAATTTATTGAAAGAGAGCTAGAAATTTGTAATGTCAGACGAAATGCTTTGCATCTC

Fln Alignment:

sp_v1.1_unigene15998___LDEVTAALAQAGLESSNLIVGIDFTKSNEWTGAKSFNHQSLHHIGDTPNPYEQAISIIGRTLSAFDEDNLIS*PWLSL-DVSTHDQNVFSFYPDNRVCNGFEEALRSYREIVPHLRLAGPTSFAPIIDAGIRIVEQSGGQYHVLLIIADGQVTRSVDSDNGQMSTQEQNTVNAIVEASDYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADSFQTNSSRNRCVDSFAGSAPPEAKDTQDAQLCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY
A9NUP8_______________LDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSAFDEDNLI--PCFGFGDASTHDQHVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPMIEGAIRIVEQSGGQYHVLLIIADGQVTRSVDIENGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVPQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRFPLPPPLGNDNYAARQQYQRADSFQTNTPRNHCGDSFAGSAPPEFKDTQDAQMCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
884	66	33			0.997452
1114	46		53		1.0
1180		30		70	1.0
1211		11		88	0.923564
1216		11		88	0.923564
1217	11		88		0.923564
1218	11		88		0.923564
1221		11		88	0.923564
1222		11		88	0.923564
1223	11		88		0.923564
1228	11		88		0.923564
1235		77		22	0.999999
1247		57		14	1.0
1249	14			85	0.993533
1250	83			16	0.994512
1252	20			80	0.995493
1253	80			20	0.995493
1255	25			75	0.996473
1482	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain