SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15991

Length: 1060 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15991

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase-like protein n=13 Tax=Picea sitchensis RepID=C0PR46_PICSI	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	glutathione s-transferase-like protein	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	91%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	91%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	91%
Blast2go	Thioredoxin fold	IPR012335	-	91%
Blast2go	Thioredoxin-like fold	IPR012336	-	91%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQV4

Fln msg:

Fln protein: MAAIKVHGFHASTATNMVLCCLNEKQVEYNFVPVDLLTGAHKKPQYLALNPFGVVPTIQDGDLTLFESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYEERLSKSKYLAGDFFSLADLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKFN*

Protein Length: 218

Fln nts: ATGGGGAATGAGGCCGTACACACTGCAATTCTAATTGAAGAGGGTTTGCTCTCAGCCTTTATTAATGGGTCGGTTTTCCAGGTTCCGGCGTGACTCGCAGATCAATCCGTGTTGACCTGTTTTGCAGTCTCTGAGAGGGAGAAACAGAGAGAGATTCA_-_ATGGCGGCGATCAAAGTGCATGGTTTTCACGCCTCCACGGCCACCAATATGGTGCTGTGCTGTTTGAATGAGAAACAAGTTGAGTACAACTTCGTCCCGGTCGATCTCCTTACTGGTGCTCACAAGAAACCCCAATATCTGGCTCTCAATCCATTTGGGGTAGTACCCACAATCCAAGATGGGGATCTCACCTTATTTGAGTCAAGAGCCATTCTCAGGTATTTGGCCCAAAAGTTCAAGGGGCAGGGCACAGATCTCTTGGGAAGTACCCTGTCTGAAGAAGCCCTGGTTTATCAATGGTGTGAGGTGGAAGGGCAGTCGTTCAATCCCCCTGTTTCGACCATAGTTTCTCAAATCCTGGTCGTCCCAAGGAGGGGAGGCAGCACAGACGAAGCAGCAGTGGAGATGAATATAGAGAAGCTGGGAAAAGTGTTGGATATTTACGAAGAAAGGTTATCAAAGAGCAAGTACTTGGCCGGTGATTTCTTCAGCTTGGCCGACCTCCAACATCTGCCCCATACTCACTACCTCGTCAACGCTTGCGGAAAGGGTGATCTCATATCTTCCAGGAAGCATGTGAATGCATGGTGGGAGGACATTTCCAGTCGCCCTACCTGGCAGAAAGTTGCAGAAAATATGAAATTTAATTGA___GAGTAAAGATTTTATGTGTATCTATGTATGCATGGCAGGCAGTAATTAAATAAAATGTGGGGATCCTATTTATATGTAACGATCCCTCATACAGGTTAATAAAGCTTTACTTCTCAGTCATTCATGGCCACAAGCACACTCTGCATCTGAAACATTAAGAATGAAGATAAGCTTTTATGAGGATGTTAGCATTTACTGTATTTATCAAAACAACATATATTTAAGTATCTTAAAAATTCAGGGAATTTTGG

Fln Alignment:

sp_v1.1_unigene15991___MAAIKVHGFHASTATNMVLCCLNEKQVEYNFVPVDLLTGAHKKPQYLALNPFGVVPTIQDGDLTLFESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYEERLSKSKYLAGDFFSLADLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKF
A9NQV4_______________MAAIKVHGYHASTATVMVLCCLNEKEVEYELVLVDLPTGAHKKPEYLALNPFGVVPTIQDGDLTLYESRAIIRYLAKKFQGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPALSIVSQILVVPMRGGSTDEAAVEMNVEKLEKVLDIYEERLSKSKYLAGDFFSLADLQHLPCTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWKKVAENMKF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
336	83			16	0.994512
338	83		16		0.994512
339			16	83	0.994512
356			14	85	0.993533
357			14	85	0.993533
363	14	85			0.993533
400	14		85		0.993533
825	9			90	0.999872
880		25		74	1.0
902		52	48		1.0
928		38		61	1.0
931	14			85	0.993533
932	14			85	0.993533
933	14	85			0.993533
966	50			50	1.0
1024		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain