SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15983

Length: 1927 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15983

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transaldolase, putative (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	transaldolase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transaldolase.	EC:2.2.1.2	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transaldolase.	EC:2.2.1.2	-	0.0	68%

Source	KEGGs	Term	Identity
AutoFact	Pentose phosphate pathway	00030	68%
AutoFact	Biosynthesis of phenylpropanoids	01061	68%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	68%
AutoFact	Biosynthesis of plant hormones	01070	68%
AutoFact	Metabolic pathways	01100	68%
AutoFact	Biosynthesis of secondary metabolites	01110	68%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	84%
Blast2go	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	GO:0004801	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Transaldolase	IPR001585	-	84%
Blast2go	Transaldolase type 2	IPR004732	-	84%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	84%
Blast2go	Transaldolase, active site	IPR018225	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR1

Fln msg:

Fln protein: MATMAQLRYAQFSSSTIANANPLEGRKSGFTNGGCVDFKGKFSAVPLFAKTTCSRGDCRNPKLSRLRCALAEPKAKVEKKTILHELYEQQGQSPWYDNLRRPVSDLKPLIESGVRGITSNPTIFEKAIISSDAYDDQFRQLINEGKGVEDTYWELVIKDIQDACELFEPIYDATGGADGYVSVEVSPRLALETEGTIEAAKWLHKRVNRRNVYIKIPATAECIPSIKQVISLGISVNVTLIFSLPRYEAVIDAYLEGLESFKGDDLSKVTSVASFFVSRVDTLVDKKLEKIGTVDALSLRGKAATAQAVLAYKLYQEKFSGPRWEALKKRGARKQRVLWASTSVKNPAYPDTLYVNPLIGPDSVTTMPDLALQAFMDHGKVSRTIDANFEEANNVYNAIEKIGIDWAEVGSLLELEGVESFKKSFDSLLISLDGKADLLKRTNS*

Protein Length: 446

Fln nts: CTTCCTATACGTCGTGACCTTGGCTGTCACTCAATCTCATAGCATTATTTCTCGCAGATCTCCGCGTCTGTGATGCATTTCTCCAATATCTGAGCGTTTGTCGTGTAAATCTCTGATCGTGTTGTATTAAGCTCTCGATCGGTTTCGACT_-_ATGGCAACCATGGCGCAATTGAGGTATGCCCAGTTTTCTTCTTCCACTATTGCTAATGCAAACCCTCTGGAGGGAAGGAAATCGGGGTTTACCAATGGGGGATGCGTGGATTTCAAGGGGAAATTTTCAGCTGTGCCGTTGTTTGCTAAAACCACGTGTTCCAGAGGGGATTGTAGAAACCCAAAGCTTTCGAGGTTGAGGTGTGCACTTGCAGAACCAAAGGCTAAAGTTGAAAAGAAAACAATTCTGCATGAGCTTTATGAGCAGCAGGGGCAGAGTCCTTGGTATGACAATCTCAGACGTCCAGTTAGTGACTTGAAACCCCTTATCGAAAGTGGAGTTCGAGGCATTACAAGCAATCCTACGATTTTTGAAAAGGCCATAATATCTTCAGATGCTTATGATGACCAGTTCAGGCAACTTATCAATGAGGGAAAGGGAGTTGAGGACACTTATTGGGAGCTTGTAATAAAAGATATCCAAGATGCATGCGAATTATTTGAACCCATTTATGATGCAACTGGAGGAGCAGATGGTTATGTTTCTGTTGAAGTCTCCCCCAGACTCGCACTCGAGACAGAAGGCACTATTGAGGCTGCTAAGTGGCTTCACAAAAGAGTCAATCGACGCAATGTCTACATTAAGATTCCAGCAACTGCAGAATGCATTCCATCTATAAAGCAAGTTATTTCACTTGGTATCAGCGTCAATGTTACTCTTATTTTTTCACTTCCGCGATATGAAGCTGTGATTGACGCATACTTGGAAGGTCTAGAATCTTTCAAGGGTGATGATCTTTCAAAAGTCACGAGTGTTGCTTCCTTTTTTGTAAGTCGTGTTGACACGCTTGTGGACAAAAAGCTTGAAAAGATCGGAACTGTTGATGCACTTTCACTCAGAGGGAAGGCTGCCACGGCACAAGCCGTTCTTGCTTACAAGCTATATCAGGAAAAGTTCTCTGGCCCTCGATGGGAAGCTCTTAAAAAAAGAGGGGCAAGAAAGCAAAGAGTATTGTGGGCCTCAACTAGTGTAAAAAATCCTGCATACCCAGATACGCTATATGTTAATCCTCTGATCGGCCCTGACAGTGTCACGACAATGCCAGATCTTGCACTCCAGGCATTCATGGACCATGGGAAGGTTTCTAGAACTATTGATGCAAATTTTGAAGAAGCAAATAATGTCTATAACGCAATTGAAAAGATAGGAATTGACTGGGCTGAAGTTGGCTCCTTACTGGAATTGGAAGGTGTTGAGTCTTTCAAGAAAAGCTTCGATAGCCTTCTTATTAGTCTCGATGGAAAAGCAGATCTCCTTAAAAGGACGAATTCATAG___ATTAGGGTCTTATTTATATCAGTCTGGACTCTGCAGTGTTTGCATATGGTTAGTTAGGTTAAATGCTAACATAACTAAAATGACATCACACTGCAGAGGGATGAATTGTGATTCTGCCAGAGTATATGGATCTGTTTTGTTAGCTTACTACGAATGTTTGTAATAATCGAATATGCAGTGCTTACATTGCATGATGTATTGGATGTTACCTGTGAGGGTTGCTATGAGAATTACCAGCTCACTTTCATTAAAGCTTATCCAAAACAATGAAATATGAGAATTACGTGCTTGGTTTCATTAAAGCTTATTCAATGAAGCAAAAATTACATTCACCGTCGTCATTATCCAAACGAAATCTGATGTCATTTCAACACATACATCCTTTCCCATAAACTTTTGATGGTCACTTGTGCATTGTACCATAAATTGATGAGATGAGAAC

Fln Alignment:

sp_v1.1_unigene15983___MATMAQLRYAQFSSSTIANANPLEGRKSGFTNGGCVDFKGKFSAVPLFAKTTCSRGDCRNPKLSRLRCALAEPKAKVEKKTILHELYEQQGQSPWYDNLRRPVSDLKPLIESGVRGITSNPTIFEKAIISSDAYDDQFRQLINEGKGVEDTYWELVIKDIQDACELFEPIYDATGGADGYVSVEVSPRLALETEGTIEAAKWLHKRVNRRNVYIKIPATAECIPSIKQVISLGISVNVTLIFSLPRYEAVIDAYLEGLESFKGDDLSKVTSVASFFVSRVDTLVDKKLEKIGTVDALSLRGKAATAQAVLAYKLYQEKFSGPRWEALKKRGARKQRVLWASTSVKNPAYPDTLYVNPLIGPDSVTTMPDLALQAFMDHGKVSRTIDANFEEANNVYNAIEKIGIDWAXXXXXXXXXXXXXFKKSFDSLLISLDGKADLLKRTNS
B8LKR1_______________MATIAQLRCAQVSSSTIANANPLEGRKSGLSNGGFVDFKGKFSAVPLFAQTIYSRGDGGARKLSRLRCALAEPKTKVEKKTILHELYEQQGQSPWYDNLRRPVTDLIPLIESGVRGITSNPTIFERAIISSDAYDDQFRQLINEGKGVEDTYWELVIKDIQDACELFEPIYDATEGADGYVSVEVSPRLALETEGTVEAAKWLHKRVNRRNVYIKIPATAECIPSIKQVISLGISVNVTLIFSLPRYEAVIDAYMEGLESFKGDDLSKITSVASFFVSRVDTLVDKKLEKIGTDDALALRGKAATAQAVLAYKLYQEKFSGPRWEALEKRGARKQRVLWASTSVKNPAYPDTLYVNPLIGPDSVTTMPDQALQAFMDHGNVSRTIDANFEEAKNAYNAIEKIGIDWAEVGSLLELEGVESFKKSFDSLLVSLDGKADLLKRANS

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
36		50	50		1.0
37			25	75	0.996473
38		75	25		0.996473
41	75	25			0.996473
42	25		75		0.996473
55		80		20	0.995493
56	80	20			0.995493
60		80	20		0.995493
61	20			80	0.995493
64			80	20	0.995493
65		80		20	0.995493
67			20	80	0.995493
72		20	80		0.995493
74		20		80	0.995493
75			80	20	0.995493
99		20		80	0.999996
106	20			80	0.999996
107	80	20			0.999996
108	80	20			0.999996
109	80			20	0.999996
111		80	20		0.999996
112			20	80	0.999996
119	20		80		0.999996
121		20	80		0.999996
135		10		90	0.90298
423		10	90		0.90298
424		90		10	0.90298
425	90			10	0.90298
430		90	10		0.90298
431	10	90			0.90298
432			10	90	0.90298
435	10		90		0.90298
436		10		90	0.90298
437	90			10	0.90298
443	88		11		0.923564
445		88	11		0.923564
446	11			88	0.923564
447		88	11		0.923564
448	88			11	0.923564
453			11	88	0.923564
456	88			11	0.923564
458	11			88	0.923564
459			22	77	0.999999
461		11	88		0.923564
464	87	12			0.992554
466	16			83	0.994512
467			16	83	0.994512
469	83	16			0.994512
470	83	16			0.994512
1039		66		33	0.997452
1319	86		13		1.0
1365		95		4	0.997494
1366			4	95	0.997494
1520	97		2		0.938918
1704		4		95	0.997218
1770	11		88		0.923564
1776	12		75	12	0.975346
1778			12	75	0.975346
1784	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain