SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15973

Length: 1602 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15973 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription elongation factor s-II, putative; K03145 transcription elongation factor S-II	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	transcription elongation factor s-	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	transcription elongation, DNA-dependent	GO:0006354	Biological Process	69%
Blast2go	regulation of transcription from RNA polymerase II promoter	GO:0006357	Biological Process	69%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	69%
Blast2go	seed dormancy process	GO:0010162	Biological Process	69%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	69%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	69%
Blast2go	DNA binding	GO:0003677	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	RNA polymerase II transcription elongation factor activity	GO:0016944	Molecular Function	69%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT74

Fln msg:

Fln protein: MGSSKAAEKELVELFEKVQKAADKAITNEAEEQRCLDALKALRAVPVTMSVLVSTQVGKRLRHLTKHPQESICVLATGLLDSWKKVVTTETLANNGNKATKSEDKQSKTIKVEVNAVKKGSVKVENKPKEEEASISNKKVSSSSNGPPKLTSMIKCNNTVRDRMRELLHEAFSKVGNEAEGDNLVRVNACDPVRVAVSVETLMFEKLGLSTGAQKLKYRSIMFNLKDANNPDLRRRVLLGEIKPEKLIVMTAEEMASDQRKLENKQIKDKALFECERGIKPKATTDQFKCGKCGQRKCTYYQLQTRSADEPMTTFVTCVNCNNHWKFC*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTTAGGTGTTTCGGAATGGAATCAAGAGCCCTAGGACCATGAATAAATAACCTTGCTGACACCCCCATGGGAGATTTGCTTCGAAGGCGTTAATGCCGTCTGATCGTACGATCGCGGGTTTCCGGGGTTCCGCGTTTCTCCGCCCAGGGCAACGCATATATCAAGATTTTGTTGCTATCCTTTCTTTGCACTGTAAATATCGCGACATATTTTGTTTTAAGGTTTGGTAGGGTTTTGATCCTGAGGTTGTTTCAGGGTTTGGTATAGGCAATAGCAGCAGCAGAGCA_-_ATGGGCTCTTCCAAAGCCGCGGAAAAGGAACTCGTGGAGCTTTTTGAGAAGGTGCAGAAGGCGGCGGACAAAGCCATTACAAATGAGGCAGAGGAGCAACGATGTCTGGATGCCCTTAAAGCCCTCCGGGCTGTACCTGTAACAATGAGTGTTCTTGTTTCAACTCAGGTTGGCAAACGCCTCCGACATCTCACAAAGCATCCTCAAGAAAGTATTTGTGTGTTAGCCACTGGCTTACTTGATTCTTGGAAGAAGGTTGTGACAACAGAAACTCTTGCTAACAATGGAAACAAAGCTACAAAATCAGAAGATAAGCAGTCCAAGACTATTAAAGTAGAGGTCAATGCTGTTAAGAAAGGTTCTGTAAAGGTTGAGAACAAACCCAAGGAAGAAGAAGCATCTATCAGCAATAAGAAGGTATCGTCCTCTTCAAATGGCCCTCCAAAGCTGACAAGTATGATTAAGTGTAATAACACAGTACGGGACAGGATGCGTGAGCTTCTTCATGAGGCTTTTTCCAAAGTAGGTAATGAAGCCGAAGGCGACAACCTGGTGAGAGTAAATGCATGTGATCCAGTACGAGTTGCAGTTTCTGTTGAGACACTGATGTTTGAAAAGTTAGGGCTGTCTACTGGAGCCCAGAAGTTGAAATATAGGTCCATCATGTTCAACCTGAAAGATGCAAACAATCCAGATTTGAGGAGGAGAGTTCTTCTTGGGGAAATTAAGCCAGAGAAACTTATTGTCATGACAGCAGAAGAAATGGCTAGTGATCAAAGAAAGCTTGAGAACAAACAGATCAAAGACAAGGCACTTTTTGAGTGTGAGCGTGGGATAAAGCCTAAAGCTACAACAGACCAATTCAAGTGTGGTAAATGTGGCCAGCGGAAGTGTACTTACTATCAGCTGCAGACAAGAAGTGCAGATGAACCTATGACTACATTTGTCACATGTGTAAATTGTAATAACCATTGGAAGTTCTGCTAA___TTTCAAGCCAGACTGCTAGCTTGGTAGGTAGAGCAGAATTAGGTTAGTGAGATCTAGAGATTCATTGCCTAGGTTAATGGCACCCTTGATTGAAAATTGATATTTGTTACATATTTACTTGACAGTAGGTATAAATGTTTGGTTAGGTTTGTCAAGATCTTTGCAGTAACTGCATATCATGGTCTAAAGTTAGACAATGGCTTCTTAGGAAAGTAAATGCAATTATCTGTAACATTCTAAGGAAAAGTACCTAATTATATTTTTTCTATTTATTTTATATGAATGAACCTGGTATTTATTG

Fln Alignment:

sp_v1.1_unigene15973___MGSSKAAEKELVELFEKVQKAADKAITNEAEEQRCLDALKALRAVPVTMSVLVSTQVGKRLRHLTKHPQESICVLATGLLDSWKKVVTTETLANNGNKATKSEDKQSKTIKVEVNAVKKGSVKVENKPKEEEAXXXXXXXXXXXNGPPKLTSMIKCNNTVRDRMRELLHEAFSKVGNEAEGDNLVRVNACDPVRVAVSVETLMFEKLGLSTGAQKLKYRSIMFNLKDANNPDLRRRVLLGEIKPEKLIVMTAEEMASDQRKLENKQIKDKALFECERGIKPKATTDQFKCGKCGQRKCTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
C0PT74_______________MGSSKAVEKELLELFEKVKKAADKAITNEAEEQRCLDALKALRAVPVTMGVLVSTQVGKRLRNLTKHPQENICTLATDLLDSWKKVVTSETLANSGNKATQSEDKQSKSIKVEDNAVKRESVKVEKKPKEEEASITNKNVSSSSNGPPKLTSMIKCNDAVRDKIREIIYEAFSKVVNEAEGENMVRINACDPVRVAVTVETLMFEKLGRSNGAQKLKYRSIIFNLKDANNPDLRRRVLLGEIKPEKLIVMTAEEMASDQRKLENKQIKDKALFECERGIKPKATTDQFKCGKCGQRKCTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
427	88		12		1.0
432	12			88	1.0
434	12			88	1.0
437		12		88	1.0
438		12	88		1.0
439	12			88	1.0
442		88	12		1.0
444		12		88	1.0
445	12			88	1.0
446	88	12			1.0
448	12		88		1.0
450			12	88	1.0
486	6			93	0.999364
527			7	92	0.999532
535	7	92			0.999532
588		90	9		0.999842
597		4	86		0.999642
600			14	80	1.0
603	15			85	1.0
604		15		85	1.0
605	15			85	1.0
608	85	15			1.0
609	15			85	1.0
610	15	85			1.0
611			15	85	1.0
612			15	85	1.0
616		15	85		1.0
618	15			85	1.0
619		15		85	1.0
674		5	10	84	0.999846
675	15			84	1.0
676		84	15		1.0
677	84			10	0.999846
678	78		21		1.0
682		15		84	1.0
685	15		84		1.0
686			15	84	1.0
690	15			84	1.0
692	84		15		1.0
773	88		11		0.923564
775	88	11			0.923564
780	11			88	0.923564
781		88	11		0.923564
782	88		11		0.923564
784		10	90		0.90298
786	90	10			0.90298
866		81		18	0.999994
1187			26	73	1.0
1320	8	75		16	0.99999
1321	8	75	16		0.99999
1322	16		8	75	0.99999
1324	75			25	1.0
1325	75	8	16		0.99999
1329	83		16		0.999991
1333	18	81			0.999994
1341	81	18			0.999994
1342	81		18		0.999994
1345		81	18		0.999994
1369	57			42	1.0
1370			42	57	1.0
1371			57	21	1.0
1373	21	78			1.0
1375		78		21	1.0
1378		21		78	1.0
1380			21	78	1.0
1381		21		78	1.0
1382		21		78	1.0
1384	21	78			1.0
1385	78		21		1.0
1388		21	64		1.0
1389	28		14		1.0
1391	71		21		1.0
1393	71	21	7		1.0
1397	54			45	1.0
1507		28	14		1.0
1508		80	20		0.995493
1509		80		20	0.995493
1510		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain