SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15954

Length: 1669 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15954

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative	-	-	5.0e-38	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	62%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Biotin/lipoyl attachment	IPR000089	-	0.0	62%
Blast2go	Single hybrid motif	IPR011053	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN96

Fln msg:

Fln protein: MAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLPAPPIPGEPMIDSDPTVTLPSSSPTPKDPPTRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK*

Protein Length: 301

Fln nts: ATGGGGGGAGAAGGGACAGCGGAGTTCACGAGAAAACTATCGAACAACTTCAACTACTACCACATGACATCTCCATCTAAAATACACACGTCGTGACCTTGGATGTCACACTAAATTACTCTTTCCTTCATCGGCCTCTTATTAGTGTTCATGACTCTCAGACTTGTCTGGAGGAAGCAGAAAATCTTGGATTGAAGCAGAGCAGGAAGCGACC_-_ATGGCAGCTTCATGCCCTCACAGCCCCTTCTACTGTTCACTGGAAACATCTACACGAGCTCAGGGTTTGCTTGAGAAAGGGGTTGTGAGGTATCTGCATTATGGCTTCTCTTACAGATCCTTTCCAAGGATGAACAGTGGGGATTCATTTAGAAGCAAGTGCAGAACACTTTCCAACCCAGGGAGAACCAAAGTTTGGCTTTCAACCAATTTCAAGGCTTCTCACGCTACATTTGCTATGGCTTCTGATGGGGATGCGATAGAGAGTGGTTCCCTGGGAGAATTAGAAAAAGAAAATCAAAATGGTGCATTGTTTCCTGATGGCATTGAGTCTTTCATAACGGAGGTCTGTGACGAGACAGACATTGCTGAGATCAAACTCAAGGCTGGAAGCTTTGCAATGCACATACGCCGGAATATAGAGAAGAGCAAAAGACCATCTTCTGTGGCATCCCCATTGCCTGCTCCTCCTATCCCAGGTGAACCAATGATTGACTCTGATCCCACAGTTACTCTGCCATCTTCTTCACCAACACCAAAAGATCCTCCTACTAGGTCTTTCAACCCATTTACAGCAAAACTACCAATGTCCAAAACATCAAAGTTCGGGCTTTTGGAGGCTGCTGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCAAAGGTTGGCATCTTCAAAAGGAGCCGAGTTGTGAAGGGAAGGAATGGAAGACCACTTTGTGAAGAGGGACAATCCATAAAAGAAGGGCAGGTTGTATGTTATTTGGATCAGCTTGGTGGCCAGACACCTATCATATCAGAAGTGTCAGGAGAAGTTGTCAAGATCTTATGGAGCGAAGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATCAAATGA___TTATATGTTTATAGTGGATTTTATGAGTAAAGCAGTGTACATTTACTTCACTGCCTCAGAATCAGTCTTATCTAGGGCACGCCTTGTGTTGACCAACGAACGATAGAAGAGTGTGAGGCTCCAAATTAAGAAGGAAGTTTCTCACTTGAGTTGGAATTTGGTGTTCTGTTCTCATTCATTTTTAGTTGGCATGCATTTATTTTTTGGATTCACAGTTCAGCGAATTGACCTTATAAGTTTATAACAAGTCCTTTTTGCCTGGTTAAATTTCATTTACAGTTTTCTACATTTTGCTATTAACAAATGAGGCATTGCGATTTGAAGAAATCTGAAGAATATTGTTGAACAATCCATAATGATGTGATATTACAAAATGTAATTACTCATTTGCAATGAATATCGTATTAGTAGTAGCATTTGGGTAGTTCAGTGTCTTACCATGGAATGCTTTATTAAAGATTATGGTTATGAGGCATTGCGATTTGAAGAAATCTGAAGAATATTGTTAAACAATCCATGATGATGTGATATTACAAAATATAATTACTCATTTGC

Fln Alignment:

sp_v1.1_unigene15954___MAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRXXXXXXXXXXXXXXXXXMIDXXXXXXXXXXXXXXXXXXXRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK
A9NN96_______________MAASCPYSPFHCSLGTSTQAQGLLEKGVVRNLHYGFSYRSLPRMDSGDSFRNKRGTLSNAGRSKVWLSSNVKASHATFAMASDKDALESGSLGELEKGNQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLTAPPVPSEPMVDFDHTVTPPPSSPAPKAPPTRSFNPFTTKLSLSKTSKFGLLEAAGDEGLCFVTAPKVGLFKRSRVVKGRNGRPLCEEGQSIKEGQVVCFLDQLGGQTPVTSEVSGEIVKILWSDGEPVGYGDPLIAVLPSFRGIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1392		90		9	0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain