SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15952

Length: 2119 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15952
ATGGGGACGTCGTGACCTTGGTGGTCAATCCATGGAGCGGAAATCTTAATTTTTATTACTGGGCGGAAGGCAGGACAGACAGAACTCTCTGCATCTCGGCTCCCTACAGGTCGGAAACCCTTGGCCTGCGCATCCATGTTTGGTTTCGATCCATGGTTCTGCCCTTAACATTTCAGGTTTTTAAGGGGTTTCACGCTTAATTCTGAACGTATAGGGGTTTTAGGAGTGTTTACGCTTAATTTTAAGGCGAAATCGGTGCAGATCGGCGATCTCCGGCAGCAGATCTGGAGTTTTTTGGAGCTATATTTGTAAGCTTGATATCTTGGGTTTCTCTTCCGAGAAGGAAAAATGCCAAGTGGTGGCGGGTTTCGGGTGCTTCATCTAGTGAGGCCATTTCTGTCAATCTTGCCCGAGGTCCAGACAGCTGAAAGAAAAGTGCCCTTCAGAGAGAAGGTTCTGTACACTGTAATCTCGCTTTTTATCTTTTTAGTATGCAGTCAGTTGCCCCTATATGGCATACATTCAGCAACTGGGGCGGATCCATTCTACTGGATGCGTGTAATTCTGGCTTCTAATCGTGGAACTGTTATGGAGCTTGGTATTACCCCAATCGTTACTTCGGGCCTAGTAATGCAGCTTTTGGCAGGATCTAAGATAATTGAGGTGGATAACAGTGTTCGTGAAGATCGGGCTCTTCTTAATGGGGCTCAGAAGTTACTCGGTGTCCTCATCACAATAGGTGAGGCAGTTGCATACGTGCTGTCTGGAATGTATGGTGACATCCGGGACCTTGGAGCTGGCAATGCCATCCTCATTATTGTCCAGCTCTTTTTCGCTGGTATAATTGTGATATGTTTGGACGAGCTACTCCAGAAAGGTTATGGATTGGGATCTGGCATTTCATTATTCATTGCTACTAATATATGCGAGAGCATTATATGGAAGGCCTTTAGTCCCACTACAATCAATAGTGGACGAGGTGCAGAGTTCGAGGGAGCTGTTATTGCATTGTTCCATTTGTTGATAACCAGAACAGACAAGGTCCGGGCGCTGCGGGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACCAACCTGCTTGCTACAGTTCTGGTTTTTCTCGTTGTCATATACTTCCAGGGTTTTCGTGTTGTTTTACCAGTGAGGTCAAAGAATGCCCGTGGGCAACAGGGATCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTACAGTCAGCTCTTGTTTCAAACTTGTATTTTATTTCCCAGTTGCTTTACCGGAAGTACAGTGGAAACTTTCTTGTTAATCTGTTGGGCAAGTGGAAGGAGTCTGAATATTCATCAAGTGGTCAATTTGTTCCTGTAGGTGGTCTTGTTTATTACATCACTCCACCTTCCAGCTTGGCGGATATGGCAGCAAATCCTTTTCATGCTCTGTTCTATTTAACTTTTATGCTGACAGCCTGTGCTCTATTCTCAAAGACATGGATTGAGGTATCTGGCTCCTCTGCAAGAGATGTGGCAAAACAGCTGAAGGAACAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGAGCTAAATCGTTACATACCAACAGCTGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCCATTGGTTCTGGGACAGGAATTCTTCTTGCAGTGACTATTATTTATCAGTACTTTGAGACATTCGAGAAGGAAAGGGCCAGTGAACTAGGTTTCTTTGGTTTTTAATGCAGTCATTTGTATTTGACAATTTTAGAGGTTAGGATGCAGACTAAACTTTAGTTGGGCTAATGCTATGGCCCTTGAAGCATGTGAATGCTGGGGATTTTGATGCCCCTTTGAAGTTTTGCAGCCATCTTTTGATTTAGATATTAAATAGAATTCACAGAAGTCAAAACTGGCAGGCAGAAAAGTCCTGTGTGCTGTACTGACATTGAGATGTTTAGGGCACTTTGAAATAACTTCTTGGTTTTTGGGACAAAAGCAATTGTATAGTTGAAAGGCCATGTATTTGTGGTATTTGCAGTTCTTTGTTTAATTACGTGAAATCTTTAAATGC

Ace file of the UniGene sp_v1.1_unigene15952 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sec61 alpha subunit n=3 Tax=BEP clade RepID=Q94B06_HORVU	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	sec61 transport protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	protein secretion	GO:0009306	Biological Process	96%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	96%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg:

Fln protein: MPSGGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIRDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSSSGQFVPVGGLVYYITPPSSLADMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF*

Protein Length: 481

Fln nts: ATGGGGACGTCGTGACCTTGGTGGTCAATCCATGGAGCGGAAATCTTAATTTTTATTACTGGGCGGAAGGCAGGACAGACAGAACTCTCTGCATCTCGGCTCCCTACAGGTCGGAAACCCTTGGCCTGCGCATCCATGTTTGGTTTCGATCCATGGTTCTGCCCTTAACATTTCAGGTTTTTAAGGGGTTTCACGCTTAATTCTGAACGTATAGGGGTTTTAGGAGTGTTTACGCTTAATTTTAAGGCGAAATCGGTGCAGATCGGCGATCTCCGGCAGCAGATCTGGAGTTTTTTGGAGCTATATTTGTAAGCTTGATATCTTGGGTTTCTCTTCCGAGAAGGAAAA_-_ATGCCAAGTGGTGGCGGGTTTCGGGTGCTTCATCTAGTGAGGCCATTTCTGTCAATCTTGCCCGAGGTCCAGACAGCTGAAAGAAAAGTGCCCTTCAGAGAGAAGGTTCTGTACACTGTAATCTCGCTTTTTATCTTTTTAGTATGCAGTCAGTTGCCCCTATATGGCATACATTCAGCAACTGGGGCGGATCCATTCTACTGGATGCGTGTAATTCTGGCTTCTAATCGTGGAACTGTTATGGAGCTTGGTATTACCCCAATCGTTACTTCGGGCCTAGTAATGCAGCTTTTGGCAGGATCTAAGATAATTGAGGTGGATAACAGTGTTCGTGAAGATCGGGCTCTTCTTAATGGGGCTCAGAAGTTACTCGGTGTCCTCATCACAATAGGTGAGGCAGTTGCATACGTGCTGTCTGGAATGTATGGTGACATCCGGGACCTTGGAGCTGGCAATGCCATCCTCATTATTGTCCAGCTCTTTTTCGCTGGTATAATTGTGATATGTTTGGACGAGCTACTCCAGAAAGGTTATGGATTGGGATCTGGCATTTCATTATTCATTGCTACTAATATATGCGAGAGCATTATATGGAAGGCCTTTAGTCCCACTACAATCAATAGTGGACGAGGTGCAGAGTTCGAGGGAGCTGTTATTGCATTGTTCCATTTGTTGATAACCAGAACAGACAAGGTCCGGGCGCTGCGGGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACCAACCTGCTTGCTACAGTTCTGGTTTTTCTCGTTGTCATATACTTCCAGGGTTTTCGTGTTGTTTTACCAGTGAGGTCAAAGAATGCCCGTGGGCAACAGGGATCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTACAGTCAGCTCTTGTTTCAAACTTGTATTTTATTTCCCAGTTGCTTTACCGGAAGTACAGTGGAAACTTTCTTGTTAATCTGTTGGGCAAGTGGAAGGAGTCTGAATATTCATCAAGTGGTCAATTTGTTCCTGTAGGTGGTCTTGTTTATTACATCACTCCACCTTCCAGCTTGGCGGATATGGCAGCAAATCCTTTTCATGCTCTGTTCTATTTAACTTTTATGCTGACAGCCTGTGCTCTATTCTCAAAGACATGGATTGAGGTATCTGGCTCCTCTGCAAGAGATGTGGCAAAACAGCTGAAGGAACAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGAGCTAAATCGTTACATACCAACAGCTGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCCATTGGTTCTGGGACAGGAATTCTTCTTGCAGTGACTATTATTTATCAGTACTTTGAGACATTCGAGAAGGAAAGGGCCAGTGAACTAGGTTTCTTTGGTTTTTAA___TGCAGTCATTTGTATTTGACAATTTTAGAGGTTAGGATGCAGACTAAACTTTAGTTGGGCTAATGCTATGGCCCTTGAAGCATGTGAATGCTGGGGATTTTGATGCCCCTTTGAAGTTTTGCAGCCATCTTTTGATTTAGATATTAAATAGAATTCACAGAAGTCAAAACTGGCAGGCAGAAAAGTCCTGTGTGCTGTACTGACATTGAGATGTTTAGGGCACTTTGAAATAACTTCTTGGTTTTTGGGACAAAAGCAATTGTATAGTTGAAAGGCCATGTATTTGTGGTATTTGCAGTTCTTTGTTTAATTACGTGAAATCTTTAAATGC

Fln Alignment:

sp_v1.1_unigene15952___MPSGGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIRDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSSSGQFVPVGGLVYYITPPSSLADMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
B8LKZ6_______________MPSGG-FRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPLVTSGLVMQLLAGSKIIEVDNSVREDRELLNGAQKLLGVLITIGEAVAYVLSGMYGDITDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSSSGQSIPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
1382		80		20	0.995493
1410		20		80	0.995493
1574	87		12		0.992554
2024		49	50		1.0
2027	96		4		0.99411
2036	52		46		1.0
2043		92	6		0.999991
2044	8			92	1.0
2045	4		95		0.994598
2047	8	91			1.0
2048		95		4	0.995055
2049	8			91	1.0
2054	8			91	1.0
2055	8	91			1.0
2056		91	8		1.0
2058		91		8	1.0
2060	45	54			1.0
2061	90	9			1.0
2065	89	10			1.0
2066		2	8	86	0.999998
2071	85		7		0.996721
2073		7		92	0.999532
2074	87		4	8	0.999414
2075	87	4			0.999414
2078		4	8	87	0.999414
2079		4	8	87	0.999414
2080	8		8	82	0.999136
2081	9	90			0.999842
2083	14		85		1.0
2084		90	9		0.999872
2085			4	80	1.0
2089	10		5	78	0.999769
2090			70	30	1.0
2092	40		40	10	1.0
2093	10		30	50	1.0
2094		10		90	0.90298
2095		40	60		1.0
2096	50	30	20		1.0
2097	20	80			0.999996
2098	30	50	20		1.0
2099	66		33		1.0
2100		50		50	1.0
2101		60	20	20	0.99255
2102	66			33	0.997452
2105			66	33	0.997452
2107		66		33	0.997452
2108	66		33		0.997452
2111	66			33	0.997452
2112		66		33	0.997452
2113			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain