SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15942

Length: 1108 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15942

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-like protein n=2 Tax=Panicoideae RepID=Q9ATP2_CENCI	-	-	4.0e-31	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	ef hand family expressed	-	-	1.4013e-45	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome branching	GO:0010091	Biological Process	1.4013e-45	66%
Blast2go	protein binding	GO:0005515	Molecular Function	1.4013e-45	66%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	1.4013e-45	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	1.4013e-45	66%
Blast2go	EF-hand-like domain	IPR011992	-	1.4013e-45	66%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	1.4013e-45	66%
Blast2go	EF-hand	IPR018248	-	1.4013e-45	66%
Blast2go	EF-HAND 2	IPR018249	-	1.4013e-45	66%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
348	33	66			0.997452
349		66		33	0.997452
350			66	33	0.997452
352	66		33		0.997452
353			33	66	0.997452
545		50		50	1.0
573	11		88		0.923564
575		16		83	0.999991
576			16	83	0.999991
584		16	83		0.999991
587		81	18		0.999994
592		80		20	0.999996
598	80			20	0.999996
600	20	80			0.999996
653		15		84	0.999986
689		12	87		0.999964
692		12	87		0.999964
693			12	87	0.999964
699			87	12	0.999964
700	87			12	0.999964
703	87	12			0.999964
704		87		12	0.999964
706			87	12	0.999964
708	11		88		0.999937
709	83	11			0.999887
711	10		89		0.999919
713		10		89	0.999919
726			84	15	1.0
975			34	65	1.0
1079			83	16	0.994512
1081		20		80	0.995493
1084		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain