SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15936

Length: 1082 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15936

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-specific protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S9Z6_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	serine threonine-specific protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL62

Fln msg: Overlapping hits, possible frame ERROR between 961 and 960, Distance to subject end: 44 aas, your sequence is shorter than subject: 361 - 443

Fln protein: VVTLAVTVGVVLVACALLCIRFRRKRSKVQRSNGIIGIDNVLSDSVIDHEAAHSSRQNGHSSWWRMHEKNFVPSSSGIPRYSYKDLQKATHNFTTVIGQGAFGPVYKAMMPTGETVAVKVLATNSSQGEREFQTEVMLLGRLHHRNLVNLVGYCVDKGERMLVYEFMSNGSLATHLYDKNARTLSWEERVSTAQDVSRGIEYLHDGAVPPVVHRDIKSANILLDHLMRARVADFGLSKEQTFDGRNSSLKGTYGYMDPDYVSTNTFTTKSDVYSFGLFLFELITGRNPQQGLIDYINLAAIGADDKSGWEEILDSRLNGxxSNIEEVRTMAALAYKCVHKNPRKRPTMRDVSQALSRLQKT

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTTACCGTTGGAGTGGTACTGGTGGCTTGTGCCCTCCTTTGCATTAGATTTCGCAGAAAACGTTCTAAAGTTCAACGTAGCAATGGTATTATTGGCATCGATAATGTACTTTCAGATTCTGTAATTGATCATGAAGCAGCTCATTCATCTAGACAAAATGGCCATTCATCTTGGTGGAGAATGCACGAGAAGAATTTTGTTCCTTCTTCCTCTGGCATTCCAAGATATTCATACAAGGATCTCCAGAAAGCTACTCATAATTTTACAACAGTTATAGGGCAGGGTGCTTTTGGCCCAGTTTATAAAGCTATGATGCCAACTGGTGAAACAGTAGCTGTGAAAGTACTTGCAACAAATTCCTCACAGGGAGAGAGGGAGTTCCAAACAGAGGTGATGTTGCTAGGAAGGTTACATCACAGAAATCTTGTGAACTTGGTGGGATATTGCGTAGACAAAGGTGAACGCATGTTGGTTTATGAGTTCATGAGCAATGGAAGTCTTGCGACCCATTTGTATGATAAGAATGCACGGACCTTAAGCTGGGAAGAAAGAGTGTCTACTGCCCAGGATGTATCCCGTGGAATTGAGTATCTTCATGATGGGGCTGTACCACCAGTTGTGCATCGGGACATAAAGTCTGCAAATATATTGTTAGACCATCTTATGAGAGCAAGGGTTGCAGATTTTGGACTTTCCAAAGAACAAACATTTGATGGCCGGAACTCAAGCCTCAAGGGAACATATGGTTACATGGACCCTGACTATGTGTCAACAAATACCTTTACAACGAAGAGTGATGTATACAGCTTTGGACTCTTTCTATTCGAACTGATTACAGGGAGGAATCCACAACAGGGCCTGATTGATTATATCAATCTTGCTGCCATTGGTGCAGACGACAAATCAGGCTGGGAAGAGATACTGGATTCACGGCTTAATGGAxxxxxxAGTAATATTGAAGAAGTTCGCACTATGGCAGCTCTTGCATACAAATGTGTTCACAAGAATCCAAGGAAGCGACCAACTATGAGAGATGTTTCACAGGCTTTGTCAAGATTACAAAAAACC

Fln Alignment:

sp_v1.1_unigene15936___IRFRRKRSKVQRSNGIIGIDNVLSDSVIDHEAAHSSRQNGHSSWWRMHEKNFVPSSSGIPRYSYKDLQKATHNFTTVIGQGAFGPVYKAMMPTGETVAVKVLATNSSQGEREFQTEVMLLGRLHHRNLVNLVGYCVDKGERMLVYEFMSNGSLATHLYDKNARTLSWEERVSTAQDVSRGIEYLHDGAVPPVVHRDIKSANILLDHLMRARVADFGLSKEQTFDGRNSSLKGTYGYMDPDYVSTNTFTTKSDVYSFGLFLFELITGRNPQQGLIDYINLAAIGADDKSGWEEILDSRLNGxSNIEEVRTMAALAYKCVHKNPRKRPTMRDVSQALSRLQKT
B8LL62_______________IRLRRKRFKVQRSNGIIGIDNILSDSVIDDEAAHASRQNGHSSWWRMHDKNFVTSASGIPRYSYKDLQKATHNFTTVIGQGAFGPVYKAMMPTGETVAVKVLATNSSQGEREFQTEVMLLGRLHHRNLVNLVGYCVDKGERMLVYEFMSNGSLATHLYDKDARILSWEERVSTAQDVSRGIEYLHDGAVPPVVHRDIKSANILLDHLMRARVADFGLSKEQTFDRRNSSLKGTYGYMDPDYVSTNTFTTKSDVYSFGLFLFELITGRNPQQGLVDYINLAAIGADDKSGWDEILDSRLNGxCNIEEVRTMAALAYKCVHKNPRKRPAMRDISQALARLQKT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
639	11		88		0.923564
714		80		20	0.995493
776		83		16	0.994512
961	33		66		0.997452
962	33		66		0.997452
965	66			33	0.997452
966	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain