SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15929

Length: 1736 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15929

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cathepsin B-like cysteine protease n=2 Tax=Oryza sativa RepID=Q5D214_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cathepsin b-like cysteine protease	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	77%
Blast2go	regulation of catalytic activity	GO:0050790	Biological Process	77%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	77%
Blast2go	vacuole	GO:0005773	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	77%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	77%
Blast2go	Peptidase C1A, propeptide	IPR012599	-	77%
Blast2go	Peptidase C1A, papain	IPR013128	-	77%
Blast2go	Peptidase C1A, cathepsin B	IPR015643	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRB4

Fln msg:

Fln protein: MGTTILTVFTAVLLACIKVSGFESFHSLDSQRPILQKSFVEHINKHSNAGWKAAMGTRFSNYTVGEFAHLLGVLPTPQKLLETVPIRFYPKGLKLPSKFDARKAWPHCTSTRTILDQGHCGSCWAFAAVEALSDRFCIHFQVNATLSENDLVACCGFRCGSGCNGGFPLSAWRYFSRRGVVTDECYPYFDNDGCNHPGCEPSYPTPRCVKHCKDNQNWSRSKHYSSNAYRIKSDPYNIMAEVFTNGPIEVSFSVYEDFAHYETGVYKHVQGRYLGGHAVKLIGWGTTDDGIDYWLIANSWNNAWGEGGFFKIARGVNECGIERDPVAGMPSAKNLIQDPTDQIGGSHQSW*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTGGGACAATGGCTAATTAGCCATCTACAATGTAACCTGTCTTTAGAAAAGACATGGAGCGAAGTCATCAAGTTGACCCGTCGTGACCTTGGCTGTCACTCAGTCATCAGTTGACCACTTGTTCATCACACTGTTTGTTTTGTGGTATCAGGTCATGACTGTTAGGTGTGACCCATCTGGTACGAATATTATTGCAATTCTAATTCCATGAAACAGAAGACATCGTAGCAGAAAGAAAGAAAGGACAGCC_-_ATGGGGACTACAATCCTTACAGTTTTCACGGCTGTTTTGCTTGCCTGTATTAAGGTGTCTGGATTCGAGTCCTTCCATTCCTTGGACAGCCAAAGACCAATTCTTCAGAAATCATTTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATGGGTACCCGATTTTCCAATTACACGGTAGGAGAATTTGCACACCTCCTTGGTGTACTTCCCACTCCTCAGAAACTGTTGGAAACTGTTCCTATTCGATTTTATCCCAAGGGTCTAAAGCTACCAAGTAAATTTGATGCACGCAAAGCTTGGCCGCATTGTACTTCTACTAGGACCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCATTTGCAGCCGTAGAAGCACTGTCAGACCGATTTTGCATTCACTTTCAAGTGAATGCCACTCTTTCAGAAAACGATTTAGTGGCATGCTGTGGATTTAGATGTGGATCAGGGTGTAATGGTGGTTTTCCATTATCTGCATGGCGCTATTTCAGTCGAAGGGGTGTTGTAACTGATGAGTGTTATCCCTACTTTGACAACGATGGTTGTAATCATCCTGGTTGCGAGCCTTCATACCCAACACCTCGGTGTGTCAAACACTGCAAGGATAATCAAAATTGGTCACGCTCCAAGCACTACAGTTCAAATGCATACAGAATCAAATCAGATCCATACAATATAATGGCTGAGGTTTTCACTAATGGTCCGATAGAGGTCTCATTTTCTGTTTATGAGGACTTTGCCCATTATGAAACTGGTGTGTACAAGCATGTCCAGGGTCGTTATTTAGGAGGACATGCTGTCAAGCTGATTGGGTGGGGCACGACAGATGATGGAATTGATTATTGGCTGATAGCAAATTCTTGGAATAATGCTTGGGGTGAGGGAGGTTTTTTCAAGATTGCAAGGGGCGTTAATGAATGTGGGATTGAAAGGGATCCAGTCGCAGGGATGCCATCTGCTAAAAATTTGATTCAGGACCCAACAGATCAAATTGGTGGAAGTCATCAGTCTTGGTGA___TTTTTTCACATTATCCTACACTAAGGATATTTATTGATGTGAGATACTTGTAACAAGCATTTAGCTATGCTTACACAGCTGGCTTATTGTCCTTATTCATATTCAGAAATCAACACTGCTTGCTGATTGTTGTCAAACCTCGGTTTCTATGGTTGTCTTTGATTTTGGTTTGCACAATCCCTATAATTTCACCTATACTAGGGTATTCTGCTTGTGCTTAAGTTATTTTTACAGCATATTTGTGGGATGTTCTAGATGTTTCTATTTTAAATTGCTCTTATGTTTCACTTTCTCCTAATTTTCTATGCCTGGAAGTATTAACATCCACTGGATAATTCTTTGTGACAGATCGTCATTTATTTTTTATTTTCATTATTTATAAACATCCATATTGTTGTCCTTCC

Fln Alignment:

sp_v1.1_unigene15929___MGTTILTVFTAVLLACIKVSGFESFHSLDSQRPILQKSFVEHINKHSNAGWKAAMGTRFSNYTVGEFAHLLGVLPTPQKLLETVPIRFYPKGLKLPSKFDARKAWPHCTSTRTILDQGHCGSCWAFAAVEALSDRFCIHFQVNATLSENDLVACCGFRCGSGCNGGFPLSAWRYFSRRGVVTDECYPYFDNDGCNHPGCEPSYPTPRCVKHCKDNQNWSRSKHYSSNAYRIKSDPYNIMAEVFTNGPIEVSFSVYEDFAHYETGVYKHVQGRYLGGHAVKLIGWGTTDDGIDYWLIANSWNNAWGEGGFFKIARGVNECGIERDPVAGMPSAKNLIQDPTDQIGGSHQSW
C0PRB4_______________MATTILTVFTTVLLACIKVSGLESFHSLESQRPILQKSFVEHINKHPNAGWKAAMSTRFSNYTVREFAHLLGVLPTPQKLLETVPVRVYPKGLKLPSKFDARKAWPHCTSTRSILDQGHCGSCWAFAAVEALSDRFCIHFQVNATLSENDLVACCGFRCGSGCNGGFPLSAWRYFSRRGVVTDECDPYFDNDGCNHPGCEPSYPTPRCVKNCKDNQRWSHSKHYSANAYRIKSDPYNIMAEVFNNGPVEVSFSVYEDFAHYETGVYKHVQGRYLGGHAVKLIGWGTTDDGIDYWLIANSWNTAWGEGGYFKIARGVNECGIERDPVAGMPSAKNLIQDPTDQIGKSHQSW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
424	11		88		0.923564
439			11	88	0.923564
765		10	90		0.90298
784		10		90	0.90298
798		90		10	0.90298
819	10			90	0.90298
852		80		20	0.999996

SSRs (tot: 1)

Start position	End position	Sequence	Length
259	272	AGAA AGAA AGAA AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain