SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15923

Length: 1791 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15923

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRM7_PHYPA	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	bah-phd domain-containing protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Blast2go	Bromo adjacent homology (BAH) domain	IPR001025	-	86%
Blast2go	Zinc finger, PHD-type	IPR001965	-	86%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	86%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	86%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY9

Fln msg:

Fln protein: MVDSRELQVSYTKFRSAAMAKSRPTKKILDSYTIKGTDKVVKVGECVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSPPPEQKQPEPKRRKMHHKK*

Protein Length: 241

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTCACTTCCCAATTTGCCAGTCCTTTCCCACCTTTTCCCTCCTTCCCTCCGTCAACCGCCGTACTTTTAACATTTCTGCGCTCGCTTCCCGTCAAATGCCGTGCATTCCCGTTTCTGCTGACCCTTTGTCGTTGCCGCTGCTGATATCCGCGTTATCATCGCACAGTCGTGGGATCGATCCGCGTTGATTCGGAACCTCCTTCAGGGTTTGGACCTGGTAAGGAAGTACAGAAAGCTCGCCCTATTGTTCGCCCGCTTCGAGTTTCGAAAGGTTGATCTCGTCGCACTCCATCGTCAAGCTCGTTTGTCGTTCGCCTGCCTCGTTTCAGGCGCCTGTAGAATTTAAAAGGAAAGCTCGCAGACAGACAGACAGAAATACGCCCTAGGGTTTCATTGGCTCTTAGTCGCCCGCGGACAATGGCGGACATATAGATAGATAAATACGTGGTCGCTTGCATTTATTTTCACCGGAAAAGCACGCAGGCGGGATATCCACGAGCGTCGT_-_ATGGTCGATTCTCGGGAGCTCCAAGTCTCGTATACAAAATTTCGATCTGCAGCGATGGCGAAATCCAGGCCGACGAAAAAAATCTTGGACTCATACACTATCAAGGGAACCGACAAGGTCGTCAAAGTCGGGGAGTGTGTGGTAATGCGTGCGGAGGATGCCCAGAAGCCACCGTATATAGCTAGGGTGGAGAAGATAGAAGCCGATGGCCGGGGAAACCATGTGAGGGTCCGTGTGCGCTGGTATTATCGGCCGGAGGAGTCCATAGGAGGCCGTCGCCAATTCCACGGCGCGAAGGAGCTTTTCCTTTCGGATCATTTCGACGAGCAGAGCGCCGATACAATTGAGGGCAAATGTAGTGTGCATACTTTCAAGAACTACACCAAACTGGATAGCGTCGGCTCCGAAGACTATTTCTGCCGTTTTGAATACAACGCCGCAACTGGAGGGTTCACTCCCGATAGGGTGGCCGTGCACTGCAAATGTGAAATGCCGTACAACCCTGATGTTTTAATGGCTCAGTGCGAAGCATGCAAGGATTGGTTCCATCCTCCATGTGTGAATTTAACGACTGAACAAGTTAAAAAGATGGACCATTTCTTCTGCTCAGATTGTATAAAGGAAGACGATATGAAACTTCGTAATTCTGGAAAAGATTCACCTCCTCCTGAACAAAAGCAACCAGAGCCCAAACGACGAAAAATGCATCATAAGAAGTGA___TTGTTTTCCAGAAGGATCCTTCAAATCATGAGATTAAGTGTAGGTTACATTGAACTTTTGGAGAGGCCTGAGCTGCTACATCATGTGTAGGTGGAAGCAGAATGTTTATAAAGTTCAAACTTTTTGAAATTTACCCAAGTTTGTCTGTGGACAGCATAATGAAAAACAAGTGCTACCTTTCTCCTCCTGTTCATGACTGGATTTTTGGTACTTTTTATTTATTATAGATCGTTTGACATGGCGATGTGGCTGTTTGATAGGAGCCGATTTATAACCATGAGAACTGGGCAGTTTAGGAGACTCCAACTGAATGTTGAGATTGTAAAGAGGATATCTTGGAGCAGATTGTAAATCTATTATATTTGGGGGAAATAAGGATATTTATAATTAGAAGAATGGTAAAGTTTTAAACGTTTTCATTACCTTTTATATCTCAACTTTGCAGGAAACTCGAGTGGTATTTTGCTGTTATACACATCCTTCTGATTATACCCAAATATGATAATCAAGTTAAATTTATTTCTGTCAAGTTAAATTT

Fln Alignment:

sp_v1.1_unigene15923___MAKSRPTKKILDSYTIKGTDKVVKVGECVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSXXXXXXXXXXXXXXMHHKK
D5ABY9_______________MAKSKPMKKVLDSYTIKGTDKVVKVGDCVVLRAEDAQKPPYIARVEKIEADGRGNHVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSPPLEQKHPETKRRKLHHKK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
95			16	83	0.994512
97			16	83	0.994512
99	83	16			0.994512
101	83			16	0.994512
103			16	83	0.994512
104			16	83	0.994512
109	16		83		0.994512
114	16	83			0.994512
329		16	83		0.994512
335		14		85	0.993533
341			14	85	0.993533
342	14	85			0.993533
343		14	85		0.993533
345		85		14	0.993533
348		85	14		0.993533
354		14		85	0.993533
402	16		83		0.994512
432	60	40			1.0
569		85		14	0.993533
570	85		14		0.993533
864	14		85		0.993533
1689		66		33	1.0
1699	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
387	402	CAGA CAGA CAGA CAGA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain