SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15918

Length: 2350 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15918
CATACTCTGTTACTAAAACCGATCTACAGACCTCGGTATACATTAAAAACCTCGATCCAACGCTAATTTTCTATTATATCGGGGATTAAAACCCTGATCGAAGGCTAATTTTCTGTTCTGTCCGNGANNTNNANNCANTNGATGCTTGCAACAATGAAAACTGCAAGGCTTCTGCTTCTGTTACTCTTCTTCTGCTTATGCTTATTACATGTAGCCGTTTCCGAGGATGAGATTATAGCGGATAGGACTTGCCGCGCCGAGCCGGGGTTGGAATCCGACTTTGGCATTCAGAAGGAATGGGAAGGGGAATTCTTTCCAGGAATTTCGAAGATAAAGTATGAGGGGCCATTGAGTAAGAATCCTCTGGCATTCAAATGGTATAATGCAGAAGAAGAGATTCTTGGAAAGAAAATGAAGGATTGGCTGAGATTTAGTGTTGCTTTCTGGCATACATTCCGTGGCAGTGGGGCTGATCCATTTGGGGCTCCAACCAAGAACTGGCCATGGGAAGATGGCACTAACTCATTAGCTATGGCTCTAAGAAGAATGAAAGCGAATTTTGAGTTTCTAACTAAATTAGGAGTTGAGCTGTGGTGCTTTCATGACCGTGACATTGCTCCTGATGGGAAAACACTCATAGAGTCTAATGCCAATCTGGATGCAGTTGTGGCTCTTGCAAAGCAGCTTCAGGAGGAAACTGGCATTCATACTTTGTGGGGAACTGCACAGTTGTTCATGCATCCTCGTTACATGCATGGAGCTGCTACGAGTCCAGATGTACGTGTTTATGCATATGCTGCAGCTCAAGTAAAGAAAGCCATGGAGGTAACACATGAATTAGGAGGAGAAAACTTTGTCTTCTGGGGTGGAAGAGAAGGTTACCAAACTCTCTTGAATACTGATCTAAAGAAGGAGCTTGACCATATGGCTAAATTTCTTCAAGCAGCGGTGAACTGGAAGAAAACCATTGGCTTCAATGGGACCCTTCTAATTGAGCCTAAGCCACAAGAACCTACAAAACACCAGTATGATTGGGATGCTGCAACAACTATGGGCTTCCTACAAAGATATGGGCTTGCAGGAGAATTTAAATTAAATGTTGAGTGCAATCATGCAACCCTCTCTGGGCACAGCTGTCATCACGAGCTGGAAATAGCACGGATTTATGGGATGCTTGGAAACATTGATGCAAACACTGGAGATGCCCAAACAGGCTGGGATACTGATCAATTTCCTACGGATATTGGAGAAGCAACTTTAATTATGTTGACCGTTATAAAGAACGGTGGGCTTGCACCTGGTGGGTTCAACTTTGATGCAAAATTACGGAGAGAGAGTGTAGATGTGGAAGATCTATTCATTGCTCATATATCGGGCATGGACACCCTTGCACGGGGCTTGAGAAATGCGGCTAAGCTGTTGCAGGATGGAAGAATGTCAGAGCTTGTTGCAAAACGTTATGAAACCTTCAATTCAAAACTAGGAGCTCTGATTGAGGATGGAGAGGTCAGTTTTGAGGAACTTGAAAAGAAAGCTCATGAATGGGGTGAACCTCCACTGTCATCAGGGAAGCAGGAACTTGCGGAGATGATTTTCCAGTCATACTTGTAATTAGCAACTGTTCATATGTCGAGAGCAAATGGAAAGCACAGGATCAGCGTCGTTACTTTCTTATAAGTGGTTTAAAAGAATAGGAAACATGTAACGCATAATGCTCTGCACCTAGTTAACGATACGCGAATTGTTAGTTTGTCTTCTTCTGTTAGTGAGGTGGTTCAACATGTAATAAATGCATTTTCGGTAGTAACACGCATGCGGCCATCTGTCAAGATCAAATGGGAAGCACAGGATCAACCATGGTTACTTTCTTAGAAGTGGTTCAAAAGAATAGGAAACATGTAGCGCATACTCTGCGCATAGTTAACGATACGCCGAATTTGTTAGTCTGTCTCCTTTCCATTGGACTTGCTATGCAATTAAGAAAATCACACGTTGCATGGATTATTTGCATTGAATTTTACTGTCAAAAGGTCATCTGCCATACTCATATTTCATTCTAGTGTTAAACTGAAGGTGGCTATTATGTAAAAGGTTAATTACTCTTGTTTTTAATCCCTCTGATAGGCGAGGTGCTCTAGGTTGGGTGAGGGAGATCTTACATGTATGGCTTGTAACACCAAAGAATTTAGTTTATATCTATAGTAATAGGCACATTACACGTTTAGTAATTTAACCAGGACAAACCACAATCCAGTTTACCGTGCTAGAAATTGGAAGGTTAACTAACACAACCTAAAGCATTAATATGTGATTAACGTGTATTTTTCAATGTACTATTTCTCTAGCAGTG

Ace file of the UniGene sp_v1.1_unigene15918

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xylose isomerase n=1 Tax=Picea sitchensis RepID=B8LKP5_PICSI	-	-	93%
FL-Next	sp=Xylose isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	xylose isomerase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylose isomerase.	EC:5.3.1.5	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	87%
Blast2go	Fructose and mannose metabolism	00051	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	D-xylose metabolic process	GO:0042732	Biological Process	87%
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	87%
Blast2go	xylose isomerase activity	GO:0009045	Molecular Function	87%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP5

Fln msg: your sequence is longer than subject: 490 - 399

Fln protein: MLATMKTARLLLLLLFFCLCLLHVAVSEDEIIADRTCRAEPGLESDFGIQKEWEGEFFPGISKIKYEGPLSKNPLAFKWYNAEEEILGKKMKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVELWCFHDRDIAPDGKTLIESNANLDAVVALAKQLQEETGIHTLWGTAQLFMHPRYMHGAATSPDVRVYAYAAAQVKKAMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNVECNHATLSGHSCHHELEIARIYGMLGNIDANTGDAQTGWDTDQFPTDIGEATLIMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIAHISGMDTLARGLRNAAKLLQDGRMSELVAKRYETFNSKLGALIEDGEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL*

Protein Length: 491

Fln nts: CATACTCTGTTACTAAAACCGATCTACAGACCTCGGTATACATTAAAAACCTCGATCCAACGCTAATTTTCTATTATATCGGGGATTAAAACCCTGATCGAAGGCTAATTTTCTGTTCTGTCCGaGActTgaActCAgTaG_-_ATGCTTGCAACAATGAAAACTGCAAGGCTTCTGCTTCTGTTACTCTTCTTCTGCTTATGCTTATTACATGTAGCCGTTTCCGAGGATGAGATTATAGCGGATAGGACTTGCCGCGCCGAGCCGGGGTTGGAATCCGACTTTGGCATTCAGAAGGAATGGGAAGGGGAATTCTTTCCAGGAATTTCGAAGATAAAGTATGAGGGGCCATTGAGTAAGAATCCTCTGGCATTCAAATGGTATAATGCAGAAGAAGAGATTCTTGGAAAGAAAATGAAGGATTGGCTGAGATTTAGTGTTGCTTTCTGGCATACATTCCGTGGCAGTGGGGCTGATCCATTTGGGGCTCCAACCAAGAACTGGCCATGGGAAGATGGCACTAACTCATTAGCTATGGCTCTAAGAAGAATGAAAGCGAATTTTGAGTTTCTAACTAAATTAGGAGTTGAGCTGTGGTGCTTTCATGACCGTGACATTGCTCCTGATGGGAAAACACTCATAGAGTCTAATGCCAATCTGGATGCAGTTGTGGCTCTTGCAAAGCAGCTTCAGGAGGAAACTGGCATTCATACTTTGTGGGGAACTGCACAGTTGTTCATGCATCCTCGTTACATGCATGGAGCTGCTACGAGTCCAGATGTACGTGTTTATGCATATGCTGCAGCTCAAGTAAAGAAAGCCATGGAGGTAACACATGAATTAGGAGGAGAAAACTTTGTCTTCTGGGGTGGAAGAGAAGGTTACCAAACTCTCTTGAATACTGATCTAAAGAAGGAGCTTGACCATATGGCTAAATTTCTTCAAGCAGCGGTGAACTGGAAGAAAACCATTGGCTTCAATGGGACCCTTCTAATTGAGCCTAAGCCACAAGAACCTACAAAACACCAGTATGATTGGGATGCTGCAACAACTATGGGCTTCCTACAAAGATATGGGCTTGCAGGAGAATTTAAATTAAATGTTGAGTGCAATCATGCAACCCTCTCTGGGCACAGCTGTCATCACGAGCTGGAAATAGCACGGATTTATGGGATGCTTGGAAACATTGATGCAAACACTGGAGATGCCCAAACAGGCTGGGATACTGATCAATTTCCTACGGATATTGGAGAAGCAACTTTAATTATGTTGACCGTTATAAAGAACGGTGGGCTTGCACCTGGTGGGTTCAACTTTGATGCAAAATTACGGAGAGAGAGTGTAGATGTGGAAGATCTATTCATTGCTCATATATCGGGCATGGACACCCTTGCACGGGGCTTGAGAAATGCGGCTAAGCTGTTGCAGGATGGAAGAATGTCAGAGCTTGTTGCAAAACGTTATGAAACCTTCAATTCAAAACTAGGAGCTCTGATTGAGGATGGAGAGGTCAGTTTTGAGGAACTTGAAAAGAAAGCTCATGAATGGGGTGAACCTCCACTGTCATCAGGGAAGCAGGAACTTGCGGAGATGATTTTCCAGTCATACTTGTAA___TTAGCAACTGTTCATATGTCGAGAGCAAATGGAAAGCACAGGATCAGCGTCGTTACTTTCTTATAAGTGGTTTAAAAGAATAGGAAACATGTAACGCATAATGCTCTGCACCTAGTTAACGATACGCGAATTGTTAGTTTGTCTTCTTCTGTTAGTGAGGTGGTTCAACATGTAATAAATGCATTTTCGGTAGTAACACGCATGCGGCCATCTGTCAAGATCAAATGGGAAGCACAGGATCAACCATGGTTACTTTCTTAGAAGTGGTTCAAAAGAATAGGAAACATGTAGCGCATACTCTGCGCATAGTTAACGATACGCCGAATTTGTTAGTCTGTCTCCTTTCCATTGGACTTGCTATGCAATTAAGAAAATCACACGTTGCATGGATTATTTGCATTGAATTTTACTGTCAAAAGGTCATCTGCCATACTCATATTTCATTCTAGTGTTAAACTGAAGGTGGCTATTATGTAAAAGGTTAATTACTCTTGTTTTTAATCCCTCTGATAGGCGAGGTGCTCTAGGTTGGGTGAGGGAGATCTTACATGTATGGCTTGTAACACCAAAGAATTTAGTTTATATCTATAGTAATAGGCACATTACACGTTTAGTAATTTAACCAGGACAAACCACAATCCAGTTTACCGTGCTAGAAATTGGAAGGTTAACTAACACAACCTAAAGCATTAATATGTGATTAACGTGTATTTTTCAATGTACTATTTCTCTAGCAGTG

Fln Alignment:

sp_v1.1_unigene15918___MKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVELWCFHDRDIAPDGKTLIESNANLDAVVALAKQLQEETGIHTLWGTAQLFMHPRYMHGAATSPDVRXXXXXXXXXXXXMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNVECNHATLSGHSCHHELEIARIYGMLGNIDANTGDAQTGWDTDQFPTDIGEATLIMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIAHISGMDTLARGLRNAAKLLQDGRMSELVAKRYETFNSKLGALIEDGEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL
B8LKP5_______________MKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVEMWCFHDRDIAPDGKTLMESNANLDAVVALAKQLQEETGIHTLWGTVQLFMHPRYMHGAATSPDARVYAYAAAQVKKAMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNIECNHATLSGHSCHHELEMSRIYGMLGNIDANTGDAQTGWDTDQFLTDIGEATLVMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIGHISGMDTLARGLRNAAKLLQDGKLSELVAKRYETLNSKLGALIEEEEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1326	78		21		1.0
1660	9		90		1.0
1697	80		19		1.0
1946		25		75	1.0
2084	88			11	0.923564
2095	28			71	1.0
2101	40	60			1.0
2124	60	40			1.0
2202	66			33	0.997452
2204			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain