SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15912

Length: 961 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15912 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Gossypium hirsutum RepID=Q08671_GOSHI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peroxidase prxr1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	88%
Blast2go	Methane metabolism	00680	88%
Blast2go	Phenylpropanoid biosynthesis	00940	88%
Blast2go	Biosynthesis of phenylpropanoids	01061	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	88%
Blast2go	heme binding	GO:0020037	Molecular Function	88%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
822	20	80			0.995493
823	80	20			0.995493
824		20	80		0.995493
825		20		80	0.995493
826		20	80		0.995493
828	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain