SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15876

Length: 1858 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15876

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylpropenal double-bond reductase n=1 Tax=Pinus taeda RepID=Q0PIN2_PINTA	-	-	91%
FL-Next	tr=Phenylpropenal double-bond reductase; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	nadp-dependent oxidoreductase p2	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q0PIN2

Fln msg:

Fln protein: MEQRVPNRELILVAYANEGPVTDSHLKIRETQLDLGSVGKDGSSGDVAVQNLWISVDPYLRHLMKESDDGLYLPSFRLNQAIRSILVGKVVASANPAFEVGDIVSGFYQVAEYAIVPGGDLRKIDTSVVKPSDYLGILGMPALTAWAGFTIVGEAKPGDEVFVSAAAGSVGMLVGQLAKIKGCRVVGSAGSDQKVKLLKEFGFDDAFNYKSETDLDAALSRYFPRGIDIYFDNVGGRMLEAVLNHINMKARIPVCGMISQYNQEWKQRFGVRNLLNLVGKCAKMEGFMSGQYHHRMGEFFEEMTGYIKQGKIKYKEDVKVGLDSFLEAFNSMFTGENIGKPVIYLGPPPPK*

Protein Length: 353

Fln nts: ATGGGGCTGGAACCCAGTAGGGAACCTAGTGGGAAGGCATTAATGCTCCGTCCCAACCACCCAGGACAACACATGAGGGACGCCCCATATGTACCAAATTTAATCCTGTATATATCGCAACGTCGTGACCTTGGCTGTCACTCTATATATTGCATCGCAGCACTAGTTGAATGGAGTGATTGTATGTACAATTGAGGCCTGCAGCATTCATTCATC_-_ATGGAGCAGAGAGTTCCCAACAGAGAGTTAATATTAGTTGCATATGCCAACGAAGGGCCCGTTACAGATTCACATCTGAAAATCAGAGAGACTCAACTGGATCTTGGAAGCGTGGGCAAAGATGGATCATCTGGAGATGTGGCTGTGCAAAATCTGTGGATATCTGTAGATCCATATCTTCGGCACCTTATGAAGGAATCCGATGATGGTCTCTATTTACCAAGTTTTCGGTTGAATCAGGCAATCCGATCTATTTTAGTGGGGAAGGTAGTGGCATCTGCTAATCCGGCCTTCGAAGTGGGTGATATCGTTTCTGGGTTCTATCAAGTTGCCGAGTACGCTATTGTTCCAGGAGGCGACCTCAGAAAAATCGACACCAGTGTTGTTAAACCGTCTGATTATTTGGGAATTCTGGGGATGCCCGCCTTGACTGCATGGGCTGGATTCACAATCGTCGGAGAAGCTAAACCCGGGGATGAAGTTTTTGTTTCGGCAGCAGCGGGCTCAGTGGGAATGCTGGTTGGGCAGCTCGCCAAAATCAAAGGCTGCCGCGTTGTTGGCAGCGCAGGTAGCGACCAGAAGGTGAAGCTGCTGAAAGAATTTGGTTTTGATGATGCCTTCAATTACAAATCTGAAACAGACTTGGATGCTGCATTGAGCAGGTACTTCCCCAGAGGTATAGATATCTACTTTGACAATGTGGGTGGACGCATGTTGGAAGCTGTTCTGAACCACATCAACATGAAAGCTCGGATTCCAGTCTGTGGGATGATCTCTCAGTATAATCAGGAGTGGAAGCAACGTTTTGGAGTGAGAAACCTGCTGAACTTGGTGGGGAAATGTGCAAAGATGGAAGGCTTCATGTCCGGGCAATACCATCATCGCATGGGGGAGTTCTTTGAGGAGATGACAGGGTACATCAAGCAAGGAAAAATCAAATACAAGGAAGATGTTAAGGTGGGGTTGGACAGTTTCTTGGAAGCTTTTAACTCCATGTTTACTGGAGAGAATATTGGTAAACCTGTCATTTATCTGGGGCCACCGCCACCAAAATAA___ATTCTGGATGAAGCCACCATAATGAATTCTGGATGGATATGAGAGGGCATATTTCTTGGGAAGAGGATCTTATCTGCAATGTTGTCACATGCAGTCATTTGTCTCAAGCCACGGCAATAAATTTTGAATGAGTATGAGAGGGCATGTTTTTGGAAGGGATGGGAATGGTAAGACGTTCTGGAATAATGTAGACAATGCAATATAGGCATCTTTCACCTTTTTTTTGAAGTGATAATTAGAAATTGTTTCAAAAGGTACAAAGATAGTTCGATAGGATTATTAAATTAGAATTGTTGAATTTCTCTAGAAGAGATGTTGGTTCAAGCCGAACGGATGAGCATTATTAAATTAGAATTGTTGAATTTCTCTAGAAGAGATGTTGGTTTAAGCCGAACGGATGAGCAGTTTGAGTTGGCTAAACGCCTTCTAATTGTTTTTTTATTATGGTAAAATTATATTGATAATTCATTGGTTTTGCTTCCAAAAGCTTGAAGGAATTTGAAGAGCAGGTATAGAATTGCTTTGTGGGATTTGATTCCAAAATCACTAATTTGTAGATATATACTCAATGAAATGTTAATTGGTT

Fln Alignment:

sp_v1.1_unigene15876___MEQRVPNRELILVAYANEGPVTDSHLKIRETQLXXXXXXXXXXXXXXXXQNLWISVDPYLRHLMKESDDGLYLPSFRLNQAIRSILVGKVVASANPAFEVGDIVSGFYQVAEYAIVPGGDLRKIDTSVVKPSDYLGILGMPALTAWAGFTIVGEAKPGDEVFVSAAAGSVGMLVGQLAKIKGCRVVGSAGSDQKVKLLKEFGFDDAFNYKSETDLDAALSRYFPRGIDIYFDNVGGRMLEAVLNHINMKARIPVCGMISQYNQEWKQRFGVRNLLNLVGKCAKMEGFMSGQYHHRMGEFFEEMTGYIKQGKIKYKEDVKVGLDSFLEAFNSMFTGENIGKPVIYLGPPPPK
Q0PIN2_______________MEQRVPNRELILVAYANEGPVTDSHLNIRETKLDLGSVGKDGSSGDVAVQNLWISVDPYLRQLMKESDDGLYLPSFPLNQAIRSILVGKVVASANPAFEVGDIVSGFYQVSEYAIVPRGDLMKIDTSVVKPSDYLGLLGMPALTAWAGFIIVGEPKPGDEVFVSAAAGSVGMLVGQLAKIKSCRVVGSAGSDQKVKLLKEFGFDDAFNYKCETDLDAALSRYFPRGIDIYFDNVGGRMLEAVLNHINMKARIPLCGMISQYNQEWKQRFGVRNLLNLVGKCAKMEGFMSGQYHHRMGEFFEEMTGYIKQGKIKYKEDVKVGLDSFLEAFNSMFTGENIGKPVIYLGPPLPK

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
584	33	66			1.0
835		40		60	1.0
859	83	16			0.994512
861	83			16	0.994512
863			16	83	0.994512
868		20		80	0.995493
869		16	83		0.994512
870		16		83	0.994512
874	83			16	0.994512
875			16	83	0.994512
877		16	83		0.994512
879			83	16	0.994512
1025		11		88	0.923564
1026			11	88	0.923564
1029		11	88		0.923564
1030	88	11			0.923564
1031			88	11	0.923564
1034	88			11	0.923564
1036	88			11	0.923564
1037	88	11			0.923564
1041	11			88	0.923564
1073	20		80		0.995493
1103		80		20	0.995493
1148	14		85		0.993533
1150	85		14		0.993533
1259		75	25		0.996473
1263	33	66			0.997452
1420	60	40			1.0
1450	60	40			1.0
1516	33	66			1.0
1523		60		40	1.0
1524		60		40	1.0
1540			60	40	1.0
1601	31		68		1.0
1606	93		6		0.999998
1628	4	2	92		0.98868
1667		76	7	15	1.0
1669	88			4	0.999262
1671	17	82			1.0
1672			68	31	1.0
1673	13		54		1.0
1674	54		45		1.0
1675	45			54	1.0
1676			54	45	1.0
1677	54		45		1.0
1678	45		54		1.0
1679		52	47		1.0
1680	52	47			1.0
1693		47		52	1.0
1698		89		10	0.999919
1701		37		62	1.0
1741	83		16		0.994512
1744		83	16		0.994512
1758		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain