SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15860

Length: 1305 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15860

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L23A n=3 Tax=Magnoliophyta RepID=RL23A_FRIAG	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	x chain localization of the large subunit ribosomal proteins into a a cryo-em map of triticum aestivum translating 80s ribosome	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	91%
Blast2go	rRNA binding	GO:0019843	Molecular Function	91%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	91%
Blast2go	ribosome	GO:0005840	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L23/L25, conserved site	IPR001014	-	91%
Blast2go	Ribosomal protein L23/L25, N-terminal	IPR005633	-	91%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	91%
Blast2go	Ribosomal protein L23/L15e core domain	IPR012678	-	91%
Blast2go	Ribosomal protein L25/L23	IPR013025	-	91%
Blast2go	Ribosomal protein L23	IPR019985	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV7

Fln msg:

Fln protein: MATSKGAVKKTDPKGQAQKAAKAVRAGASSLKRKSRKIRTSVIFHRPRTFKRPRNPKYPRISAPPRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKAAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII*

Protein Length: 156

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCGAGTGTGGAAGGTCCTATAGTAAACATATCATTAGGTCTCGTCAAGGAACATTTAGGGCGAATTGAATAGATTCTTTGACGTCCGCTGTTCTTTACAAGGTTGGGAGAGCCGAGTAATATGGGGGTTGTCTTCGGCGGATAAACGGCGTGCGGCGGCA_-_ATGGCAACTTCTAAAGGTGCTGTGAAGAAGACCGATCCAAAGGGTCAGGCACAAAAGGCAGCAAAAGCAGTCAGGGCAGGTGCGTCTTCTTTGAAGAGGAAGTCAAGAAAGATAAGAACATCTGTAATATTTCACCGACCAAGGACATTCAAGAGACCTCGCAATCCTAAGTATCCACGAATCAGTGCACCCCCTAGGAACAAGCTTGATCAATATGAGGTGTTGAAATACCCCCTGACAACTGAGTCTGCAATGAAGAAGATAGAGGACAACAATACTCTTGTCTTTATTGTTGATGTACGGGCAGACAAGAAGAAGATAAAGGCTGCAGTGAAGAAGATGTATGACATTCAAACGAAGAAAGTGAACACTTTAATCAGGCCTGATGGGTTGAAGAAAGCATATGTGAGGCTGACACCAGATTATGATGCCTTGGATGTAGCAAACAAAATTGGCATCATCTAA___ACCGTTGGATACATGTTTGTACTTGGAAGTTTTGTTTTAAGTAGATCACAAATTTAGGCTTTTCTTGTCTTTCTGAAGCCATATTGTAGATCTCGAATTTTTGCAGGAATGTTGAGCTTGTTTTCATTTTGACTTTGTTTCTCACCAGGCATTCTATGCCTGCCTTTTTGCTGCAAACTAACTTTTATCATCAGATGCTCCCAATTGGGATCATGTTCTGATTTTTTATTGCATTATAGATCTTTAATACATTGTTGGTGCTTCAATATTTATATATCTAAAGTTAGAGTATCAAGGTGTTTCTTTATCAATGCTCATAAATGGTTTCAGAGTTTAGCTCAACATTTATGATCTGTCTGCATCCCTTTTATACATTCTAGATGTGCACACTACACATTGTCTGGATACATTAGAAATAGACAGAATAGGGTCCATTGGAGCAATGTTTTATGACAAAGTACATATGGCACTGTATCACCTTGGACAGTTGATAACATTTGGTATCTTCATAGATCGGACCTTGGACAGTTGATAACATTCGGTATATTCATTGATCGGACCTTGGACAGTTGATAACATTTGGTAAAAATTCTGATATGATGGCAAACGGACTTTATTGGTATTCTTGTCATAAAAAGTATTGATACTTTTAT

Fln Alignment:

sp_v1.1_unigene15860___MATSKGAVKKTDPXXXXXXXXXXXXXXXSSLKRKSRKIRTSVIFHRPRTFKRPRNPKYPRISAPPRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII
B8LPV7_______________MAPPKGTVKKTDPKGQAQKAAKAVKAGASTLKRKSRKIRTSVIFHRPRTFKRPRNPKYPRISAPPRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKDAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
337			9	90	1.0
462	87		8	3	1.0
463	87		1	3	1.0
464			3	96	0.99245
465	94		1		0.95615
472			9	90	1.0
475			3	96	0.99411
478		3		96	0.995055
479		1		90	1.0
556	95		4		0.9982
770	16	83			0.994512
843	93		6		0.999364
854		93		6	0.999453
855		93		6	0.999453
856	93		6		0.999453
857	93		6		0.999453
858		6		93	0.999453
861			93	6	0.999453
862		6	93		0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain